[gmx-users] Simulating a peptide

[Itamar Kass]

Shalom Raja,

I would have use more residues, as the structure of 10 residues peptide is 
very unstable.

Itamar.

===========================================
| Itamar Kass
| The Alexander Silberman
| Institute of Life Sciences
| Department of Biological Chemistry
| The Hebrew University, Givat-Ram
| Jerusalem, 91904, Israel
| Tel: +972-(0)2-6585194
| Fax: +972-(0)2-6584329
| Email: ikass at cc.huji.ac.il
| Net: http://www.ls.huji.ac.il/~membranelab/itamar/itamar_homepage.html
============================================
----- Original Message ----- 
From: "raja" <raja_28 at fastmail.us>
To: "Discussion list for GROMACS users" <gmx-users at gromacs.org>
Sent: Wednesday, February 15, 2006 3:00 PM
Subject: [gmx-users] Simulating a peptide


> Dear all,
>      I want to simulate a peptide of 10 residues length small part of a
>      protein of my interest), to see its secondary structure variation
>      upon mutation. Is it enough to simulate that 10 residues  alone to
>      see the change or is it mandatory to put entire protein and to
>      seek for posible way to constraint other uninterested region.
>
> With Thanks !
>
> B.Nataraj
>
> -- 
>  raja
>  raja_28 at fastmail.us
>
> -- 
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