[gmx-users] DNA Simulation

David van der Spoel spoel at xray.bmc.uu.se
Sat Feb 18 10:07:13 CET 2006


ramadugu at sscu.iisc.ernet.in wrote:
> Dear Gromacs users,
>    I'm trying to run a simulation with DNA and drug. I have generated 
> the top file for the drug using the online server. But when I'm trying 
> to generate the gms and top files for the DNA I'm unable to do using the 
> pdb2gmx with any of the force fields. Could anyone please tell if I can 
> get any tutorial for the DNA-drug simulation.
try the amber force field from the STanford group.

> Thanks for ur help in advance.
> Regards,
>  Sai
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please don't post (un)subscribe requests to the list. Use the www 
> interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php


-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++



More information about the gromacs.org_gmx-users mailing list