[gmx-users] DNA Simulation

raja raja_28 at fastmail.us
Sat Feb 18 14:35:59 CET 2006

     Use AMBER99 forceField from Folding at home site


On Sat, 18 Feb 2006 13:01:58 +0530 (IST), ramadugu at sscu.iisc.ernet.in
> Dear Gromacs users,
>     I'm trying to run a simulation with DNA and drug. I have generated
>     the 
> top file for the drug using the online server. But when I'm trying to 
> generate the gms and top files for the DNA I'm unable to do using the 
> pdb2gmx with any of the force fields. Could anyone please tell if I can 
> get any tutorial for the DNA-drug simulation.
> Thanks for ur help in advance.
> Regards,
>   Sai
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