[gmx-users] problems with compiling CVS source, nb_kernel010_c.lo is not a valid libtool object

[David van der Spoel]

Michael Brunsteiner wrote:
> Dear all,
> 
> just got the latest CVS source using the procedure outlined in
> http://www.gromacs.org/developer/cvs_usage.php
> in the gmx directory I say ./bootstrap followed by ./configure and make.
> make quickly gives up because of a mising seperator in gmxlib/Makefile
> when I out-comment the offending lines as in (i havent installed
> blas or lapack anyway):
> 
> #if !GMX_EXTERNAL_BLAS
>   BLAS_DIR       = gmx_blas
>   BLAS_LIBOBJS   = gmx_blas/libblas.la       
> 
> #if !GMX_EXTERNAL_LAPACK
>   LAPACK_DIR     = gmx_lapack
>   LAPACK_LIBOBJS = gmx_lapack/liblapack.la
> 
> ... it compiles until:
> 
> /bin/sh ../../../../libtool --mode=link cc  -O3 -fomit-frame-pointer
> -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops  -o
> libnb_kernel.la   nb_kernel.lo nb_kernel010_c.lo nb_kernel020_c.lo
> nb_kernel030_c.lo nb_kernel100_c.lo    nb_kernel101_c.lo nb_kernel102_c.lo
> nb_kernel103_c.lo nb_kernel104_c.lo         nb_kernel110_c.lo nb_kernel111_c.lo
> nb_kernel112_c.lo nb_kernel113_c.lo      nb_kernel114_c.lo nb_kernel120_c.lo
> nb_kernel121_c.lo nb_kernel122_c.lo      nb_kernel123_c.lo nb_kernel124_c.lo
> nb_kernel130_c.lo nb_kernel131_c.lo         nb_kernel132_c.lo nb_kernel133_c.lo
> nb_kernel134_c.lo nb_kernel200_c.lo      nb_kernel201_c.lo nb_kernel202_c.lo
> nb_kernel203_c.lo nb_kernel204_c.lo      nb_kernel210_c.lo nb_kernel211_c.lo
> nb_kernel212_c.lo nb_kernel213_c.lo         nb_kernel214_c.lo nb_kernel220_c.lo
> nb_kernel221_c.lo nb_kernel222_c.lo      nb_kernel223_c.lo nb_kernel224_c.lo
> nb_kernel230_c.lo nb_kernel231_c.lo      nb_kernel232_c.lo nb_kernel233_c.lo
> nb_kernel234_c.lo nb_kernel300_c.lo         nb_kernel301_c.lo nb_kernel302_c.lo
> nb_kernel303_c.lo nb_kernel304_c.lo      nb_kernel310_c.lo nb_kernel311_c.lo
> nb_kernel312_c.lo nb_kernel313_c.lo      nb_kernel314_c.lo nb_kernel320_c.lo
> nb_kernel321_c.lo nb_kernel322_c.lo         nb_kernel323_c.lo nb_kernel324_c.lo
> nb_kernel330_c.lo nb_kernel331_c.lo      nb_kernel332_c.lo nb_kernel333_c.lo
> nb_kernel334_c.lo nb_kernel400_c.lo      nb_kernel410_c.lo nb_kernel420_c.lo
> nb_kernel430_c.lo -lnsl -lfftw3f -lm
> libtool: link: `nb_kernel010_c.lo' is not a valid libtool object
> 
> ... now this is beyond me ... anybody seen this ??

you probably want the latest 3.3 code, (cvs co -j release-3-3-patches)
Have you tried make distclean?

Otherwise what OS/platform is this?
> 
> thanks for any help/advice!
> cheers,
> Michael
> 
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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