[gmx-users] Error in installation
Erik Lindahl
lindahl at sbc.su.se
Thu Jan 19 13:06:37 CET 2006
Hi,
You might need to enable shared libraries explicitly when building
FFTW3, at least if you are trying to enable the Gromacs libraries to
be shared.
Cheers,
Erik
On Jan 19, 2006, at 12:46 PM, Dhananjay wrote:
> *** Warning: This system can not link to static lib archive /usr/
> local/lib/libfftw3.la.
> *** I have the capability to make that library automatically link
> in when
> *** you link to this library. But I can only do this if you have a
> *** shared version of the library, which you do not appear to have.
>
>
> I hope this is the real error.
>
> Now please tell me what is wrong ?
>
> On 1/19/06, David van der Spoel <spoel at xray.bmc.uu.se> wrote:
> Dhananjay wrote:
> > Well, I have Gromacs-3.3 with single precision.
> >
> > lam-7.0.6 is alrady installed and fftw-3.0.1 with double
> precision is
> > also installed.
> > befire excuting following steps I have gone through following steps:
> >
> > export CPPFLAGS=-I/usr/local/includ
> > export LDFLAGS=-L/usr/local/lib
> >
> > then for Gromacs-3.3 with double precission I took following steps:
> >
> > 1. make distclean
> > 2. ./configure --disable-float --enable-shared
> > 3. make
> >
> > make has generated following error:
> >
> > collect2: ld returned 1 exit status
> > make[3]: *** [grompp] Error 1
> > make[3]: Leaving directory
> > `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3/
> src/kernel'
> > make[2]: *** [all-recursive] Error 1
> > make[2]: Leaving directory
> > `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3/src'
> > make[1]: *** [all] Error 2
> > make[1]: Leaving directory
> > `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs- 3.3/
> src'
> > make: *** [all-recursive] Error 1
> >
> >
> > What is wrong here ?
> You still don't print the real error.
>
> >
> >
> > On 1/19/06, *David van der Spoel* < spoel at xray.bmc.uu.se
> > <mailto:spoel at xray.bmc.uu.se>> wrote:
> >
> > Dhananjay wrote:
> > > Hello all,
> > >
> > > I got error in installation of gromacs in double
> precision. The
> > error is
> > > as follows:
> > >
> > > collect2: ld returned 1 exit status
> > > make[3]: *** [grompp] Error 1
> > > make[3]: Leaving directory
> > >
> > `/usr/data/dhananjay/Dhananjay_installation/Gromacs/
> gromacs-3.3/src/kernel'
> > > make[2]: *** [all-recursive] Error 1
> > > make[2]: Leaving directory
> > > `/usr/data/dhananjay/Dhananjay_installation/Gromacs/
> gromacs- 3.3/src'
> > > make[1]: *** [all] Error 2
> > > make[1]: Leaving directory
> > > `/usr/data/dhananjay/Dhananjay_installation/Gromacs/
> gromacs-3.3/src'
> > > make: *** [all-recursive] Error 1
> > >
> > > I have followed all the steps given on the web and still
> grtting
> > this error.
> > >
> > > Please tell me what is wrong here ?
> > you have not send the interesting bit of information, right
> before this,
> > i.e. the real error.
> > what platform is this?
> >
> > >
> > > -- Dhananjay
> > >
> > >
> > >
> >
> ----------------------------------------------------------------------
> --
> > >
> > > _______________________________________________
> > > gmx-users mailing list
> > > gmx-users at gromacs.org <mailto: gmx-users at gromacs.org>
> > > http://www.gromacs.org/mailman/listinfo/gmx-users
> > > Please don't post (un)subscribe requests to the list. Use the
> > > www interface or send it to gmx-users-request at gromacs.org
> > <mailto:gmx-users-request at gromacs.org >.
> >
> >
> > --
> > David.
> >
> ______________________________________________________________________
> __
> > David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics
> group,
> > Dept. of Cell and Molecular Biology, Uppsala University.
> > Husargatan 3, Box 596, 75124 Uppsala, Sweden
> > phone: 46 18 471 4205 fax: 46 18 511 755
> > spoel at xray.bmc.uu.se
> > <mailto:spoel at xray.bmc.uu.se> spoel at gromacs.org
> > <mailto:spoel at gromacs.org> http://folding.bmc.uu.se
> > ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> ++++++++++
> > _______________________________________________
> > gmx-users mailing list
> > gmx-users at gromacs.org <mailto: gmx-users at gromacs.org>
> > http://www.gromacs.org/mailman/listinfo/gmx-users
> > Please don't post (un)subscribe requests to the list. Use the
> > www interface or send it to gmx-users-request at gromacs.org
> > <mailto:gmx-users-request at gromacs.org >.
> >
> >
> >
> >
> ----------------------------------------------------------------------
> --
> >
> > _______________________________________________
> > gmx-users mailing list
> > gmx-users at gromacs.org
> > http://www.gromacs.org/mailman/listinfo/gmx-users
> > Please don't post (un)subscribe requests to the list. Use the
> > www interface or send it to gmx-users-request at gromacs.org.
>
>
> --
> David.
> ______________________________________________________________________
> __
> David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
> Dept. of Cell and Molecular Biology, Uppsala University.
> Husargatan 3, Box 596, 75124 Uppsala, Sweden
> phone: 46 18 471 4205 fax: 46 18 511 755
> spoel at xray.bmc.uu.se spoel at gromacs.org http://folding.bmc.uu.se
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> ++++
> _______________________________________________
> gmx-users mailing list
> gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
>
> _______________________________________________
> gmx-users mailing list
> gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
-----------------------------------------------------------
Erik Lindahl <lindahl at sbc.su.se> Backup address:
<erik.lindahl at gmail.com>
Assistant Professor, Computational Structural Biology
Stockholm Bioinformatics Center, Stockholm University, SE 106 91
Stockholm
Phone: +46 8 5537 8564 Fax: +46 8 5537 8214
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20060119/7078aaf8/attachment.html>
More information about the gromacs.org_gmx-users
mailing list