[gmx-users] Error in installation
Yang Ye
leafyoung81-group at yahoo.com
Thu Jan 19 13:34:23 CET 2006
Did the warning explain the reason by itself? Apparently fftw3 was not
properly installed, you shall not use --enable-static for libfftw.
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Yang Ye
Dhananjay wrote:
> *** Warning: This system can not link to static lib archive
> /usr/local/lib/libfftw3.la.
> *** I have the capability to make that library automatically link in when
> *** you link to this library. But I can only do this if you have a
> *** shared version of the library, which you do not appear to have.
>
>
> I hope this is the real error.
>
> Now please tell me what is wrong ?
>
> On 1/19/06, *David van der Spoel* <spoel at xray.bmc.uu.se
> <mailto:spoel at xray.bmc.uu.se>> wrote:
>
> Dhananjay wrote:
> > Well, I have Gromacs-3.3 with single precision.
> >
> > lam-7.0.6 is alrady installed and fftw-3.0.1 with double
> precision is
> > also installed.
> > befire excuting following steps I have gone through following steps:
> >
> > export CPPFLAGS=-I/usr/local/includ
> > export LDFLAGS=-L/usr/local/lib
> >
> > then for Gromacs-3.3 with double precission I took following steps:
> >
> > 1. make distclean
> > 2. ./configure --disable-float --enable-shared
> > 3. make
> >
> > make has generated following error:
> >
> > collect2: ld returned 1 exit status
> > make[3]: *** [grompp] Error 1
> > make[3]: Leaving directory
> >
> `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3/src/kernel'
> > make[2]: *** [all-recursive] Error 1
> > make[2]: Leaving directory
> > `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3/src'
> > make[1]: *** [all] Error 2
> > make[1]: Leaving directory
> > `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-
> 3.3/src'
> > make: *** [all-recursive] Error 1
> >
> >
> > What is wrong here ?
> You still don't print the real error.
>
> >
> >
> > On 1/19/06, *David van der Spoel* < spoel at xray.bmc.uu.se
> <mailto:spoel at xray.bmc.uu.se>
> > <mailto:spoel at xray.bmc.uu.se <mailto:spoel at xray.bmc.uu.se>>> wrote:
> >
> > Dhananjay wrote:
> > > Hello all,
> > >
> > > I got error in installation of gromacs in double
> precision. The
> > error is
> > > as follows:
> > >
> > > collect2: ld returned 1 exit status
> > > make[3]: *** [grompp] Error 1
> > > make[3]: Leaving directory
> > >
> >
> `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3/src/kernel'
> > > make[2]: *** [all-recursive] Error 1
> > > make[2]: Leaving directory
> > >
> `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs- 3.3/src'
> > > make[1]: *** [all] Error 2
> > > make[1]: Leaving directory
> > >
> `/usr/data/dhananjay/Dhananjay_installation/Gromacs/gromacs-3.3/src'
> > > make: *** [all-recursive] Error 1
> > >
> > > I have followed all the steps given on the web and still
> grtting
> > this error.
> > >
> > > Please tell me what is wrong here ?
> > you have not send the interesting bit of information, right
> before this,
> > i.e. the real error.
> > what platform is this?
> >
> > >
> > > -- Dhananjay
> > >
> > >
> > >
> >
> ------------------------------------------------------------------------
>
> > >
> > > _______________________________________________
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> >
> >
> > --
> > David.
> >
> ________________________________________________________________________
> > David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics
> group,
> > Dept. of Cell and Molecular Biology, Uppsala University.
> > Husargatan 3, Box 596, 75124 Uppsala, Sweden
> > phone: 46 18 471 4205 fax: 46 18 511 755
> > spoel at xray.bmc.uu.se <mailto:spoel at xray.bmc.uu.se>
> > <mailto:spoel at xray.bmc.uu.se
> <mailto:spoel at xray.bmc.uu.se>> spoel at gromacs.org
> <mailto:spoel at gromacs.org>
> > <mailto:spoel at gromacs.org <mailto:spoel at gromacs.org>>
> http://folding.bmc.uu.se
> >
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>
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> >
> >
> >
> >
> ------------------------------------------------------------------------
> >
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>
> --
> David.
> ________________________________________________________________________
> David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
> Dept. of Cell and Molecular Biology, Uppsala University.
> Husargatan 3, Box 596, 75124 Uppsala, Sweden
> phone: 46 18 471 4205 fax: 46 18 511 755
> spoel at xray.bmc.uu.se
> <mailto:spoel at xray.bmc.uu.se> spoel at gromacs.org
> <mailto:spoel at gromacs.org> http://folding.bmc.uu.se
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--
/Regards,/
Yang Ye
/Computational Biology Lab
School of Biological Sciences
Nanyang Technological University
Singapore
Tel: 6316-2884
/
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