[gmx-users] Measuring Atom Distances

[Dallas B. Warren]

> I tried g_dist, and the out put is nothing but zeros.  I only 
> have the two unconnected atoms indexed that I want to 
> measure, could that be the problem? 

I would check what you are doing.  It shouldn't matter whether the atoms
are connected or not, g_dist will measure the distance between them.
Are you sure you have set up the index groups correctly?

Catch ya,

Dr. Dallas Warren
Lecturer
Department of Pharmaceutical Biology and Pharmacology
Victorian College of Pharmacy, Monash University
381 Royal Parade, Parkville VIC 3010
dallas.warren at vcp.monash.edu.au
+61 3 9903 9524
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When the only tool you own is a hammer, every problem begins to resemble
a nail.