[gmx-users] ITD-Modelling

[Florian Haberl]

hi,

On Wednesday 05 July 2006 09:34, Torsten Stauder wrote:
> > So the native and the insert structures are known....
> >
> >> Any suggestions how to model such a ITD-sequence into a wild type
> >> receptor?
> >
> > ... so what's the problem?
>
> I wouldn't ask if I'd know how to do that....

I think you need some molecular modelling or homology modelling.
If you know how it should look like (e.g. like a certain protein) take this as 
a model. You can use for example

http://www.expasy.org/spdbv/

or 

modeller ( http://salilab.org/modeller/ )

greetings,

Florian

-- 
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 Florian Haberl                        
 Computer-Chemie-Centrum   
 Universitaet Erlangen/ Nuernberg
 Naegelsbachstr 25
 D-91052 Erlangen
 Mailto: florian.haberl AT chemie.uni-erlangen.de
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