[gmx-users] ITD-Modelling

Mark Abraham Mark.Abraham at anu.edu.au
Thu Jul 6 07:56:31 CEST 2006

Torsten Stauder wrote:
>>So the native and the insert structures are known....
>>>Any suggestions how to model such a ITD-sequence into a wild type
>>... so what's the problem?
> I wouldn't ask if I'd know how to do that....

Well if you have structures, you can cut and paste them together in any 
number of molecule-building programs. If you don't have structures then 
you have an awkward problem - you now either want to do an homology 
model using some other software, and/or want to guess something vaguely 
reasonable and do an MD simulation and see what you find out.


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