[gmx-users] Is 2D projection

[Wei Fu]

Dear gmx users,

Does the 2D projection plot has something to do with convergence of the
trajectory? If so, what kind of shape of plot shows the trajectory is
non-converged? 

Normally, I use RMSD plot to see if the trajectory tends to converge. Now
my concern is how to see whether trajectory is conserved or not based on
2D projection analyses.  

Thanks in advance,

Linda