[gmx-users] Is 2D projection

Mark Abraham mark.abraham at anu.edu.au
Fri Jul 7 03:57:50 CEST 2006

> Dear gmx users,
> Does the 2D projection plot has something to do with convergence of the
> trajectory? If so, what kind of shape of plot shows the trajectory is
> non-converged?
> Normally, I use RMSD plot to see if the trajectory tends to converge. Now
> my concern is how to see whether trajectory is conserved or not based on
> 2D projection analyses.

2D projection of what? Can you provide a reference to an algorithm or
paper that describes it?


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