[gmx-users] Is 2D projection

[Mark Abraham]

> Dear gmx users,
>
> Does the 2D projection plot has something to do with convergence of the
> trajectory? If so, what kind of shape of plot shows the trajectory is
> non-converged?
>
> Normally, I use RMSD plot to see if the trajectory tends to converge. Now
> my concern is how to see whether trajectory is conserved or not based on
> 2D projection analyses.

2D projection of what? Can you provide a reference to an algorithm or
paper that describes it?

Mark