[gmx-users] question: negative pressure
lugalzagissi
lugalzagissi at yandex.ru
Sun Jul 23 04:29:05 CEST 2006
Hello.
My problem is the next:
I ran the 5 ns simulation of a molecule of polyethylene C1000 with pressure coupling under the temperature of 1000K. The parameters for p.coupling are the next:
Pcoupl = berendsen
Pcoupltype = isotropic
tau_p = 1.0
compressibility = 4.5e-5
ref_p = 1.0
The average pressure for all the simulation is negative. These results I've got with g_energy:
Energy Average RMSD Fluct. Drift Tot-Drift
-------------------------------------------------------------------------------
Potential 25695.5 347.159 341.527 0.117271 215.748
Kinetic En. 24928.9 294.821 294.818 0.00230749 4.24516
Total Energy 50624.4 184.928 173.682 0.119579 219.993
Temperature 999.58 11.8215 11.8214 9.2524e-05 0.170219
Pressure (bar) -0.0807379 41.7124 41.7124 1.04028e-05 0.0191384
Volume 946.272 29.3151 1.62577 -0.0551136 -101.394
Could anybody explain, why?
Thanks
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