[gmx-users] make_hole

[mahbubeh zarrabi]

Dear freinds
I want to make a hole in popc , i run below commands 
make_hole.pl -f .pdb -o .pdb -r 2.7 -lipat p8 -lipid
pop
grompp_hole -f .mdp -o .tpr -c .pdb -r .pdb -p .top  
but error is appear:
one of the box vectors is shorter than twice the
cut_off lenght.

whould you please help me?
best regard


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