[gmx-users] GROMACS SGI Error

[David van der Spoel]

Akshay Patny wrote:
> Hi
> 
>  
> 
> I am trying to install GROMACS 3.3.1 on SGI Irix 6.5.20m.
> 
>  
> 
> I installed and used fftw-3.1.1 during the compiling of gromacs.
> 
>  
> 
> After I configure using
> 
>  
> 
> ./configure –prefix=/usr/people/guest/gromacs
> 
>  
> 
> I did
> 
>  
> 
> make
> 
>  
> 
> and got the following error
> 
> ____________________________________________________________
> 
> INLINE_INTRINSICS -c make_edi.c
> 
> cc-1005 cc: ERROR File = make_edi.c, Line = 49
> 
>   The source file "gmx_fatal.h" is unavailable.
> 
>  
> 
>   #include "gmx_fatal.h"
> 
>                         ^

please replace gmx_fatal.h by fatal.h

> 
>  
> 
> 1 catastrophic error detected in the compilation of "make_edi.c".
> 
> Compilation terminated.
> 
> *** Error code 2 (bu21)
> 
> *** Error code 1 (bu21)
> 
> *** Error code 1 (bu21)
> 
> *** Error code 1 (bu21)
> 
> ____________________________________________________________
> 
>  
> 
> I have modified gmx_fft_fftw3.c (replaced VOID with char in line 150) 
> and gmx_chi.c (replaced ;; with a ;) as per previous discussions. I also 
> used the file make_edi.c provided by Dr. Erik Lindahl.
> 
>  
> 
> Can you suggest me how to fix it?
> 
>  
> 
> Kind Regards
> 
> Akshay
> 
>  
> 
> **Akshay Patny***
> 
> *****
> 
> **Graduate Research Assistant**
> Faser Hall 417, Department of Medicinal Chemistry
> 
> Research Institute of Pharmaceutical Sciences
> University of Mississippi
> University, MS 38677
> E-mail: akshay17 at olemiss.edu <mailto:akshay17 at olemiss.edu>
> Tel: 662-915-1286 (office); Web: www.olemiss.edu <http://www.olemiss.edu>
> 
>  
> 
> 
> ------------------------------------------------------------------------
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se
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