[gmx-users] Gromacs-mpi with Rocks v4.0
Arneh Babakhani
ababakha at mccammon.ucsd.edu
Thu Jun 15 17:02:08 CEST 2006
>>
> So what does config.log tell you? Which test program does not compile?
To be honest, I can't tell what's going on in config.log (I've pasted it
below). I see a 'failed program' message with respect to confdefs.h ,
but I saw this during the configuration without mpi enabled (and it
worked fine). I also see: configure:6802: error: cannot compute sizeof
(int), 77
Thanks, Arneh
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by GROMACS configure 3.3.1, which was
generated by GNU Autoconf 2.59. Invocation command line was
$ ./configure --enable-mpi --prefix=/home/ababakha/gromacs-3.3.1
## --------- ##
## Platform. ##
## --------- ##
hostname = chemcca40.ucsd.edu
uname -m = i686
uname -r = 2.6.9-22.ELsmp
uname -s = Linux
uname -v = #1 SMP Sat Oct 8 19:11:43 CDT 2005
/usr/bin/uname -p = unknown
/bin/uname -X = unknown
/bin/arch = i686
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /opt/gridengine/bin/lx26-x86
PATH: /usr/kerberos/bin
PATH: /opt/intel/itc60/bin
PATH: /opt/intel/ita60/bin
PATH: /opt/intel/fc/9.0/bin
PATH: /opt/intel/idb/9.0/bin
PATH: /opt/intel/cc/9.0/bin
PATH: /usr/local/bin
PATH: /bin
PATH: /usr/bin
PATH: /opt/ganglia/bin
PATH: /opt/lam/gnu/bin
PATH: /usr/share/pvm3/lib
PATH: /usr/share/pvm3/lib/LINUX
PATH: /usr/share/pvm3/bin/LINUX
PATH: /opt/rocks/bin
PATH: /opt/rocks/sbin
PATH: /usr/X11R6/bin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:1580: checking build system type
configure:1598: result: i686-pc-linux-gnu
configure:1606: checking host system type
configure:1620: result: i686-pc-linux-gnu
configure:1643: checking for a BSD-compatible install
configure:1698: result: /usr/bin/install -c
configure:1709: checking whether build environment is sane
configure:1752: result: yes
configure:1817: checking for gawk
configure:1833: found /bin/gawk
configure:1843: result: gawk
configure:1853: checking whether make sets $(MAKE)
configure:1873: result: yes
configure:2036: checking how to create a ustar tar archive
configure:2049: tar --version
tar (GNU tar) 1.14
Copyright (C) 2004 Free Software Foundation, Inc.
This program comes with NO WARRANTY, to the extent permitted by law.
You may redistribute it under the terms of the GNU General Public License;
see the file named COPYING for details.
Written by John Gilmore and Jay Fenlason.
configure:2052: $? = 0
configure:2092: tardir=conftest.dir && eval tar --format=ustar -chf -
"$tardir" >conftest.tar
configure:2095: $? = 0
configure:2099: tar -xf - <conftest.tar
configure:2102: $? = 0
configure:2115: result: gnutar
configure:2663: checking for cc
configure:2679: found /usr/bin/cc
configure:2689: result: cc
configure:2710: checking for C compiler version
configure:2713: cc --version </dev/null >&5
cc (GCC) 3.4.4 20050721 (Red Hat 3.4.4-2)
Copyright (C) 2004 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:2716: $? = 0
configure:2718: cc -v </dev/null >&5
Reading specs from /usr/lib/gcc/i386-redhat-linux/3.4.4/specs
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man
--infodir=/usr/share/info --enable-shared --enable-threads=posix
--disable-checking --with-system-zlib --enable-__cxa_atexit
--disable-libunwind-exceptions --enable-java-awt=gtk
--host=i386-redhat-linux
Thread model: posix
gcc version 3.4.4 20050721 (Red Hat 3.4.4-2)
configure:2721: $? = 0
configure:2723: cc -V </dev/null >&5
cc: `-V' option must have argument
configure:2726: $? = 1
configure:2749: checking for C compiler default output file name
configure:2752: cc -I/home/ababakha/fftw-3.0.1/include
-L/home/ababakha/fftw-3.0.1/lib conftest.c >&5
configure:2755: $? = 0
configure:2801: result: a.out
configure:2806: checking whether the C compiler works
configure:2812: ./a.out
configure:2815: $? = 0
configure:2832: result: yes
configure:2839: checking whether we are cross compiling
configure:2841: result: no
configure:2844: checking for suffix of executables
configure:2846: cc -o conftest -I/home/ababakha/fftw-3.0.1/include
-L/home/ababakha/fftw-3.0.1/lib conftest.c >&5
configure:2849: $? = 0
configure:2874: result:
configure:2880: checking for suffix of object files
configure:2901: cc -c -I/home/ababakha/fftw-3.0.1/include conftest.c >&5
configure:2904: $? = 0
configure:2926: result: o
configure:2930: checking whether we are using the GNU C compiler
configure:2954: cc -c -I/home/ababakha/fftw-3.0.1/include conftest.c >&5
configure:2960: $? = 0
configure:2964: test -z
|| test ! -s conftest.err
configure:2967: $? = 0
configure:2970: test -s conftest.o
configure:2973: $? = 0
configure:2986: result: yes
configure:2992: checking whether cc accepts -g
configure:3013: cc -c -g -I/home/ababakha/fftw-3.0.1/include conftest.c >&5
configure:3019: $? = 0
configure:3023: test -z
|| test ! -s conftest.err
configure:3026: $? = 0
configure:3029: test -s conftest.o
configure:3032: $? = 0
configure:3043: result: yes
configure:3060: checking for cc option to accept ANSI C
configure:3130: cc -c -g -O2 -I/home/ababakha/fftw-3.0.1/include
conftest.c >&5
configure:3136: $? = 0
configure:3140: test -z
|| test ! -s conftest.err
configure:3143: $? = 0
configure:3146: test -s conftest.o
configure:3149: $? = 0
configure:3167: result: none needed
configure:3185: cc -c -g -O2 -I/home/ababakha/fftw-3.0.1/include
conftest.c >&5
conftest.c:2: error: syntax error before "me"
configure:3191: $? = 1
configure: failed program was:
| #ifndef __cplusplus
| choke me
| #endif
configure:3335: checking for style of include used by make
configure:3363: result: GNU
configure:3391: checking dependency style of cc
configure:3481: result: gcc3
configure:3757: checking for mpxlc
configure:3786: result: no
configure:3757: checking for mpicc
configure:3773: found /opt/lam/gnu/bin/mpicc
configure:3783: result: mpicc
configure:3796: checking whether the MPI cc command works
configure:3815: mpicc -o conftest -g -O2
-I/home/ababakha/fftw-3.0.1/include -L/home/ababakha/fftw-3.0.1/lib
conftest.c >&5
configure:3821: $? = 0
configure:3825: test -z
|| test ! -s conftest.err
configure:3828: $? = 0
configure:3831: test -s conftest
configure:3834: $? = 0
configure:3836: result: yes
configure:4720: checking how to run the C preprocessor
configure:4755: mpicc -E -I/home/ababakha/fftw-3.0.1/include conftest.c
configure:4761: $? = 0
configure:4793: mpicc -E -I/home/ababakha/fftw-3.0.1/include conftest.c
conftest.c:19:28: ac_nonexistent.h: No such file or directory
mpicc: No such file or directory
configure:4799: $? = 1
configure: failed program was:
| /* confdefs.h. */
|
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.1"
| #define PACKAGE_STRING "GROMACS 3.3.1"
| #define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.1"
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Jun 14 15:55:19 PDT 2006"
| #define BUILD_USER "ababakha at chemcca40.ucsd.edu"
| #define BUILD_MACHINE "Linux 2.6.9-22.ELsmp i686"
| #define GMX_MPI
| #define F77_OR_C_FUNC(name,NAME) name
| #define F77_OR_C_FUNC_(name,NAME) name
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:4838: result: mpicc -E
configure:4862: mpicc -E -I/home/ababakha/fftw-3.0.1/include conftest.c
configure:4868: $? = 0
configure:4900: mpicc -E -I/home/ababakha/fftw-3.0.1/include conftest.c
conftest.c:19:28: ac_nonexistent.h: No such file or directory
mpicc: No such file or directory
configure:4906: $? = 1
configure: failed program was:
| /* confdefs.h. */
|
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.1"
| #define PACKAGE_STRING "GROMACS 3.3.1"
| #define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.1"
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Jun 14 15:55:19 PDT 2006"
| #define BUILD_USER "ababakha at chemcca40.ucsd.edu"
| #define BUILD_MACHINE "Linux 2.6.9-22.ELsmp i686"
| #define GMX_MPI
| #define F77_OR_C_FUNC(name,NAME) name
| #define F77_OR_C_FUNC_(name,NAME) name
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:5337: checking whether mpicc accepts -O3
configure:5355: result: yes
configure:5379: checking whether mpicc accepts -malign-double
configure:5397: result: yes
configure:5666: checking whether mpicc accepts -funroll-all-loops
configure:5684: result: yes
configure:5723: checking whether mpicc accepts -O3 -fomit-frame-pointer
-finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops
configure:5741: result: yes
configure:5832: checking whether byte ordering is bigendian
configure:5867: mpicc -c -O3 -fomit-frame-pointer -finline-functions
-Wall -Wno-unused -malign-double -funroll-all-loops
-I/home/ababakha/fftw-3.0.1/include conftest.c >&5
configure:5873: $? = 0
configure:5877: test -z
|| test ! -s conftest.err
configure:5880: $? = 0
configure:5883: test -s conftest.o
configure:5886: $? = 0
configure:5918: mpicc -c -O3 -fomit-frame-pointer -finline-functions
-Wall -Wno-unused -malign-double -funroll-all-loops
-I/home/ababakha/fftw-3.0.1/include conftest.c >&5
conftest.c: In function `main':
conftest.c:34: error: `not' undeclared (first use in this function)
conftest.c:34: error: (Each undeclared identifier is reported only once
conftest.c:34: error: for each function it appears in.)
conftest.c:34: error: syntax error before "big"
mpicc: No such file or directory
configure:5924: $? = 1
configure: failed program was:
| /* confdefs.h. */
|
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.1"
| #define PACKAGE_STRING "GROMACS 3.3.1"
| #define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.1"
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Jun 14 15:55:19 PDT 2006"
| #define BUILD_USER "ababakha at chemcca40.ucsd.edu"
| #define BUILD_MACHINE "Linux 2.6.9-22.ELsmp i686"
| #define GMX_MPI
| #define F77_OR_C_FUNC(name,NAME) name
| #define F77_OR_C_FUNC_(name,NAME) name
| /* end confdefs.h. */
| #include <sys/types.h>
| #include <sys/param.h>
|
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| int
| main ()
| {
| #if BYTE_ORDER != BIG_ENDIAN
| not big endian
| #endif
|
| ;
| return 0;
| }
configure:6067: result: no
configure:6091: checking for egrep
configure:6101: result: grep -E
configure:6106: checking for ANSI C header files
configure:6139: mpicc -c -O3 -fomit-frame-pointer -finline-functions
-Wall -Wno-unused -malign-double -funroll-all-loops
-I/home/ababakha/fftw-3.0.1/include conftest.c >&5
configure:6145: $? = 0
configure:6149: test -z
|| test ! -s conftest.err
configure:6152: $? = 0
configure:6155: test -s conftest.o
configure:6158: $? = 0
configure:6247: mpicc -o conftest -O3 -fomit-frame-pointer
-finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops
-I/home/ababakha/fftw-3.0.1/include -L/home/ababakha/fftw-3.0.1/lib
conftest.c >&5
conftest.c: In function `main':
conftest.c:36: warning: implicit declaration of function `exit'
configure:6250: $? = 0
configure:6252: ./conftest
./conftest: error while loading shared libraries: liblamf77mpi.so.0:
cannot open shared object file: No such file or directory
configure:6255: $? = 127
configure: program exited with status 127
configure: failed program was:
| /* confdefs.h. */
|
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.1"
| #define PACKAGE_STRING "GROMACS 3.3.1"
| #define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.1"
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Jun 14 15:55:19 PDT 2006"
| #define BUILD_USER "ababakha at chemcca40.ucsd.edu"
| #define BUILD_MACHINE "Linux 2.6.9-22.ELsmp i686"
| #define GMX_MPI
| #define F77_OR_C_FUNC(name,NAME) name
| #define F77_OR_C_FUNC_(name,NAME) name
| /* end confdefs.h. */
| #include <ctype.h>
| #if ((' ' & 0x0FF) == 0x020)
| # define ISLOWER(c) ('a' <= (c) && (c) <= 'z')
| # define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c))
| #else
| # define ISLOWER(c) (('a' <= (c) && (c) <= 'i')
|| ('j' <= (c) && (c) <= 'r') || ('s' <= (c) && (c) <=
'z'))
| # define TOUPPER(c) (ISLOWER(c) ? ((c) | 0x40) : (c))
| #endif
|
| #define XOR(e, f) (((e) && !(f)) || (!(e) && (f)))
| int
| main ()
| {
| int i;
| for (i = 0; i < 256; i++)
| if (XOR (islower (i), ISLOWER (i))
| || toupper (i) != TOUPPER (i))
| exit(2);
| exit (0);
| }
configure:6270: result: no
configure:6294: checking for sys/types.h
configure:6310: mpicc -c -O3 -fomit-frame-pointer -finline-functions
-Wall -Wno-unused -malign-double -funroll-all-loops
-I/home/ababakha/fftw-3.0.1/include conftest.c >&5
configure:6316: $? = 0
configure:6320: test -z
|| test ! -s conftest.err
configure:6323: $? = 0
configure:6326: test -s conftest.o
configure:6329: $? = 0
configure:6340: result: yes
configure:6294: checking for sys/stat.h
configure:6310: mpicc -c -O3 -fomit-frame-pointer -finline-functions
-Wall -Wno-unused -malign-double -funroll-all-loops
-I/home/ababakha/fftw-3.0.1/include conftest.c >&5
configure:6316: $? = 0
configure:6320: test -z
|| test ! -s conftest.err
configure:6323: $? = 0
configure:6326: test -s conftest.o
configure:6329: $? = 0
configure:6340: result: yes
configure:6294: checking for stdlib.h
configure:6310: mpicc -c -O3 -fomit-frame-pointer -finline-functions
-Wall -Wno-unused -malign-double -funroll-all-loops
-I/home/ababakha/fftw-3.0.1/include conftest.c >&5
configure:6316: $? = 0
configure:6320: test -z
|| test ! -s conftest.err
configure:6323: $? = 0
configure:6326: test -s conftest.o
configure:6329: $? = 0
configure:6340: result: yes
configure:6294: checking for string.h
configure:6310: mpicc -c -O3 -fomit-frame-pointer -finline-functions
-Wall -Wno-unused -malign-double -funroll-all-loops
-I/home/ababakha/fftw-3.0.1/include conftest.c >&5
configure:6316: $? = 0
configure:6320: test -z
|| test ! -s conftest.err
configure:6323: $? = 0
configure:6326: test -s conftest.o
configure:6329: $? = 0
configure:6340: result: yes
configure:6294: checking for memory.h
configure:6310: mpicc -c -O3 -fomit-frame-pointer -finline-functions
-Wall -Wno-unused -malign-double -funroll-all-loops
-I/home/ababakha/fftw-3.0.1/include conftest.c >&5
configure:6316: $? = 0
configure:6320: test -z
|| test ! -s conftest.err
configure:6323: $? = 0
configure:6326: test -s conftest.o
configure:6329: $? = 0
configure:6340: result: yes
configure:6294: checking for strings.h
configure:6310: mpicc -c -O3 -fomit-frame-pointer -finline-functions
-Wall -Wno-unused -malign-double -funroll-all-loops
-I/home/ababakha/fftw-3.0.1/include conftest.c >&5
configure:6316: $? = 0
configure:6320: test -z
|| test ! -s conftest.err
configure:6323: $? = 0
configure:6326: test -s conftest.o
configure:6329: $? = 0
configure:6340: result: yes
configure:6294: checking for inttypes.h
configure:6310: mpicc -c -O3 -fomit-frame-pointer -finline-functions
-Wall -Wno-unused -malign-double -funroll-all-loops
-I/home/ababakha/fftw-3.0.1/include conftest.c >&5
configure:6316: $? = 0
configure:6320: test -z
|| test ! -s conftest.err
configure:6323: $? = 0
configure:6326: test -s conftest.o
configure:6329: $? = 0
configure:6340: result: yes
configure:6294: checking for stdint.h
configure:6310: mpicc -c -O3 -fomit-frame-pointer -finline-functions
-Wall -Wno-unused -malign-double -funroll-all-loops
-I/home/ababakha/fftw-3.0.1/include conftest.c >&5
configure:6316: $? = 0
configure:6320: test -z
|| test ! -s conftest.err
configure:6323: $? = 0
configure:6326: test -s conftest.o
configure:6329: $? = 0
configure:6340: result: yes
configure:6294: checking for unistd.h
configure:6310: mpicc -c -O3 -fomit-frame-pointer -finline-functions
-Wall -Wno-unused -malign-double -funroll-all-loops
-I/home/ababakha/fftw-3.0.1/include conftest.c >&5
configure:6316: $? = 0
configure:6320: test -z
|| test ! -s conftest.err
configure:6323: $? = 0
configure:6326: test -s conftest.o
configure:6329: $? = 0
configure:6340: result: yes
configure:6352: checking for int
configure:6384: mpicc -c -O3 -fomit-frame-pointer -finline-functions
-Wall -Wno-unused -malign-double -funroll-all-loops
-I/home/ababakha/fftw-3.0.1/include conftest.c >&5
configure:6390: $? = 0
configure:6394: test -z
|| test ! -s conftest.err
configure:6397: $? = 0
configure:6400: test -s conftest.o
configure:6403: $? = 0
configure:6414: result: yes
configure:6417: checking size of int
configure:6784: mpicc -o conftest -O3 -fomit-frame-pointer
-finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops
-I/home/ababakha/fftw-3.0.1/include -L/home/ababakha/fftw-3.0.1/lib
conftest.c >&5
configure:6787: $? = 0
configure:6789: ./conftest
./conftest: error while loading shared libraries: liblamf77mpi.so.0:
cannot open shared object file: No such file or directory
configure:6792: $? = 127
configure: program exited with status 127
configure: failed program was:
| /* confdefs.h. */
|
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.1"
| #define PACKAGE_STRING "GROMACS 3.3.1"
| #define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.1"
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Jun 14 15:55:19 PDT 2006"
| #define BUILD_USER "ababakha at chemcca40.ucsd.edu"
| #define BUILD_MACHINE "Linux 2.6.9-22.ELsmp i686"
| #define GMX_MPI
| #define F77_OR_C_FUNC(name,NAME) name
| #define F77_OR_C_FUNC_(name,NAME) name
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h. */
| #include <stdio.h>
| #if HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #if HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #if STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # if HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #if HAVE_STRING_H
| # if !STDC_HEADERS && HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #if HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #if HAVE_INTTYPES_H
| # include <inttypes.h>
| #else
| # if HAVE_STDINT_H
| # include <stdint.h>
| # endif
| #endif
| #if HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| long longval () { return (long) (sizeof (int)); }
| unsigned long ulongval () { return (long) (sizeof (int)); }
| #include <stdio.h>
| #include <stdlib.h>
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| int
| main ()
| {
|
| FILE *f = fopen ("conftest.val", "w");
| if (! f)
| exit (1);
| if (((long) (sizeof (int))) < 0)
| {
| long i = longval ();
| if (i != ((long) (sizeof (int))))
| exit (1);
| fprintf (f, "%ld\n", i);
| }
| else
| {
| unsigned long i = ulongval ();
| if (i != ((long) (sizeof (int))))
| exit (1);
| fprintf (f, "%lu\n", i);
| }
| exit (ferror (f) || fclose (f) != 0);
|
| ;
| return 0;
| }
configure:6802: error: cannot compute sizeof (int), 77
See `config.log' for more details.
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=i686-pc-linux-gnu
ac_cv_build_alias=i686-pc-linux-gnu
ac_cv_c_bigendian=no
ac_cv_c_compiler_gnu=yes
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=set
ac_cv_env_CPPFLAGS_value=-I/home/ababakha/fftw-3.0.1/include
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value=-L/home/ababakha/fftw-3.0.1/lib
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_exeext=
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=no
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=i686-pc-linux-gnu
ac_cv_host_alias=i686-pc-linux-gnu
ac_cv_objext=o
ac_cv_path_install='/usr/bin/install -c'
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='mpicc -E'
ac_cv_prog_MPICC=mpicc
ac_cv_prog_ac_ct_CC=cc
ac_cv_prog_cc_g=yes
ac_cv_prog_cc_stdc=
ac_cv_prog_egrep='grep -E'
ac_cv_prog_make_make_set=yes
ac_cv_type_int=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_prog_tar_ustar=gnutar
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL} /home/ababakha/Downloads/gromacs-3.3.1/config/missing
--run aclocal-1.9'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} /home/ababakha/Downloads/gromacs-3.3.1/config/missing
--run tar'
AR=''
AS=''
ASFLAGS=' -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused
-malign-double -funroll-all-loops'
AUTOCONF='${SHELL} /home/ababakha/Downloads/gromacs-3.3.1/config/missing
--run autoconf'
AUTOHEADER='${SHELL}
/home/ababakha/Downloads/gromacs-3.3.1/config/missing --run autoheader'
AUTOMAKE='${SHELL} /home/ababakha/Downloads/gromacs-3.3.1/config/missing
--run automake-1.9'
AWK='gawk'
CC='mpicc'
CCAS=''
CCASFLAGS=''
CCDEPMODE='depmode=gcc3'
CC_FOR_BUILD='cc'
CFLAGS=' -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused
-malign-double -funroll-all-loops'
CPP='mpicc -E'
CPPFLAGS='-I/home/ababakha/fftw-3.0.1/include'
CXX=''
CXXCPP=''
CXXDEPMODE=''
CXXFLAGS=''
CYGPATH_W='echo'
DEFS=''
DEPDIR='.deps'
DLLTOOL=''
ECHO='echo'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='grep -E'
EXEEXT=''
F77=''
F77LINK='$(LINK)'
FFLAGS=''
FLIBS=''
GMXANA_LIBOBJS=''
GMXLIB_LIBOBJS=''
GMX_DOUBLE_FALSE=''
GMX_DOUBLE_TRUE='#'
GMX_EXTERNAL_BLAS_FALSE=''
GMX_EXTERNAL_BLAS_TRUE='#'
GMX_EXTERNAL_LAPACK_FALSE=''
GMX_EXTERNAL_LAPACK_TRUE='#'
GMX_FORTRAN_FALSE=''
GMX_FORTRAN_TRUE='#'
GMX_IA32_3DNOW_FALSE=''
GMX_IA32_3DNOW_TRUE=''
GMX_IA32_SSE2_FALSE=''
GMX_IA32_SSE2_TRUE=''
GMX_IA32_SSE_FALSE=''
GMX_IA32_SSE_TRUE=''
GMX_IA64_ASM_DOUBLE_FALSE=''
GMX_IA64_ASM_DOUBLE_TRUE=''
GMX_IA64_ASM_SINGLE_FALSE=''
GMX_IA64_ASM_SINGLE_TRUE=''
GMX_PPC_ALTIVEC_FALSE=''
GMX_PPC_ALTIVEC_TRUE=''
GMX_PREFETCH_FORCES_FALSE=''
GMX_PREFETCH_FORCES_TRUE='#'
GMX_SOFTWARE_SQRT_FALSE='#'
GMX_SOFTWARE_SQRT_TRUE=''
GMX_THREAD_FALSE=''
GMX_THREAD_TRUE='#'
GMX_X86_64_SSE2_FALSE=''
GMX_X86_64_SSE2_TRUE=''
GMX_X86_64_SSE_FALSE=''
GMX_X86_64_SSE_TRUE=''
INCLUDES=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s'
LDFLAGS='-L/home/ababakha/fftw-3.0.1/lib '
LIBOBJS=''
LIBS=''
LIBSUFFIX=''
LIBTOOL=''
LN_S=''
LTLIBOBJS=''
MAKEINFO='${SHELL} /home/ababakha/Downloads/gromacs-3.3.1/config/missing
--run makeinfo'
MDLIB_LIBOBJS=' qm_gaussian.lo'
MPICC='mpicc'
OBJDUMP=''
OBJEXT='o'
PACKAGE='gromacs'
PACKAGE_BUGREPORT='gmx-users at gromacs.org'
PACKAGE_NAME='GROMACS'
PACKAGE_STRING='GROMACS 3.3.1'
PACKAGE_TARNAME='gromacs'
PACKAGE_VERSION='3.3.1'
PATH_SEPARATOR=':'
RANLIB=''
RPM=''
SET_MAKE=''
SHARED_VERSION_INFO='4:0:0'
SHELL='/bin/sh'
STRIP=''
USE_X11_FALSE=''
USE_X11_TRUE=''
VERSION='3.3.1'
X_CFLAGS=''
X_EXTRA_LIBS=''
X_LIBS=''
X_PRE_LIBS=''
ac_ct_AR=''
ac_ct_AS=''
ac_ct_CC='cc'
ac_ct_CXX=''
ac_ct_DLLTOOL=''
ac_ct_F77=''
ac_ct_OBJDUMP=''
ac_ct_RANLIB=''
ac_ct_STRIP=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE=''
am__fastdepCXX_TRUE=''
am__include='include'
am__leading_dot='.'
am__quote=''
am__tar='tar --format=ustar -chf - "$$tardir"'
am__untar='tar -xf -'
bindir='${exec_prefix}/bin'
build='i686-pc-linux-gnu'
build_alias=''
build_cpu='i686'
build_os='linux-gnu'
build_vendor='pc'
datadir='${prefix}/share'
exec_prefix='NONE'
host='i686-pc-linux-gnu'
host_alias=''
host_cpu='i686'
host_os='linux-gnu'
host_vendor='pc'
includedir='${prefix}/include'
infodir='${prefix}/info'
install_sh='/home/ababakha/Downloads/gromacs-3.3.1/config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localstatedir='${prefix}/var'
mandir='${prefix}/man'
mkdir_p='mkdir -p --'
oldincludedir='/usr/include'
prefix='/home/ababakha/gromacs-3.3.1'
program_transform_name='s,x,x,'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
#define BUILD_MACHINE "Linux 2.6.9-22.ELsmp i686"
#define BUILD_TIME "Wed Jun 14 15:55:19 PDT 2006"
#define BUILD_USER "ababakha at chemcca40.ucsd.edu"
#define F77_OR_C_FUNC(name,NAME) name
#define F77_OR_C_FUNC_(name,NAME) name
#define GMX_MPI
#define GMX_QMMM_GAUSSIAN
#define GMX_SOFTWARE_SQRT
#define HAVE_INTTYPES_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STDINT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRINGS_H 1
#define HAVE_STRING_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_UNISTD_H 1
#define PACKAGE "gromacs"
#define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
#define PACKAGE_NAME "GROMACS"
#define PACKAGE_STRING "GROMACS 3.3.1"
#define PACKAGE_TARNAME "gromacs"
#define PACKAGE_VERSION "3.3.1"
#define VERSION "3.3.1"
configure: exit 1
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