[gmx-users] afm rate , quick question about units.

Arneh Babakhani ababakha at mccammon.ucsd.edu
Mon Jun 19 22:58:15 CEST 2006

Hello, in the GMX manual, on page 117, it states:

  afm rate1 =
  afm rate2 =
  The rate at which the spring moves in *nm/ps* for each group.

In my ppa file, I specify:

*   afm rate1 = 1*

But in the log file of my mdrun, it states:

  Pull rate: 1.000000e+00 *nm/ns*. Force constant: 1.000000e+03 kJ/(mol nm)
  Pull direction:    0.000    0.000    1.000

So which are the right units of this parameter??? (manual vs. the log file)



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