[gmx-users] PDB2GMX PROBLEM: *** buffer overflow detected ***: pdb2gmx terminated

[David van der Spoel]

Anthony Cruz wrote:
> Hi:
> I want to run a simulation of a heme protein. I found that in the gromacs site 
> the bug in the specbond.c and I download this file from bugzilla. I 
> substitute this file in the source and try to build a new rpm to install. 
> When I instal the new rpm and try to use pdb2gmx the progam stop with the 
> followin error:
> 
> :-)  G  R  O  M  A  C  S  (-:
> 
> *** buffer overflow detected ***: pdb2gmx terminated
> Aborted
> 
> How I could fix that???

please give more info, both on system size and on compilation, OS etc.
> 
> Thanks 
> 
> Anthony
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se
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