[gmx-users] Inner product for two proteins eignevector trajectory

Tsjerk Wassenaar tsjerkw at gmail.com
Wed Nov 29 11:30:00 CET 2006

Hi Raja,

Do the covariance analysis on a subset of your atoms, which is equal
in both structures, using index files.



On 11/29/06, raja <raja_28 at fastmail.us> wrote:
> Hi gmxions,
> I like compute matrix of inner products using the command g_anaeig
> between eigenvector trr file of two different protein. When I do it, it
> shows error of dimension mismatch between two trr file, the error is
> understandable by me since eigen vectors computed for these two proteins
> are of different residue length, How to overcome this issue? Kindly
> reply me.
> With thanks!
> B.Nataraj
> --
>   raja
>   raja_28 at fastmail.us
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Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623

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