[gmx-users] DOPC simulation

Jian Dai djpittdj at gmail.com
Wed Oct 4 18:40:08 CEST 2006

Hi, all:
I'm trying to run a simulation on DOPC bilayer, I've downloaded the pdb file
of DOPC from Dr. Scott Feller's website.
Currently my questions are:
1. how to delete those hydrogens. When I use pdb2gmx, it complains residue
"OLE" not found;
2. how to make the topology file, dopc.itp. I know there's PRODRG, but not
sure how to use it properly. It seems that one has to make some
modifications to the .itp file produced by it, and I don't know how to do
Thank you in advance.
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