[gmx-users] GROMACS TOPOLOGY

Gavin Seddon gavin.m.seddon at manchester.ac.uk
Fri Oct 6 05:45:54 CEST 2006


Hi
I created a topology file using prodrg for glutathione which I put into
the correct ff file in ~/top.  Upon running pd2gmx

I get
Fatal error:
in .rtp file in residue GTT at line:
     1        OM     1  GTT     O11     1   -0.225  15.9994'

On inspection I see the topology format is wrong.  How should I proceed?
Gavin.

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