[gmx-users] [Fwd: g_sas in GROMACS]

[David van der Spoel]

-------- Original Message --------
Subject: g_sas in GROMACS
Date: Sat, 14 Apr 2007 21:35:59 +0400
From: Evstigneev Maxim <max_evstigneev at mail.ru>
Reply-To: Evstigneev Maxim <max_evstigneev at mail.ru>
To: spoel at gromacs.org

Dear Dr van der Spoel,

Please advise us to sort out the following situation with Gromacs.

I installed Gromacs version 3.3.1 and Amber force fields for Gromacs 
(for DNA analysis). Then I used pdb2mx program in order to create 
topology files, which had been successfully executed. After that I tried 
to use pdb and topology DNA files in G_SAS program. At this point the 
message: "Can not read file    this file is from a Gromacs version which 
is older than 2.0. Make a new one with grompp or use a gro or pdb file, 
if possible" was generated. I also failed to launch G_SAS program with 
protein files.

Thank you in advance.

Sincerely,
Dr Maxim P. Evstigneev,
Reader of Physics and Biophysics,
Department of Physics,
Sevastopol National Technical University, Ukraine

-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se
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