April 2007 Archives by author
Starting: Sun Apr 1 04:31:42 CEST 2007
Ending: Mon Apr 30 11:45:59 CEST 2007
Messages: 437
- [gmx-users] modify C6 directly in FF using sigma and epsilon
Mu Yuguang (Dr)
- [gmx-users] modify C6 directly in FF using sigma and epsilon
Mu Yuguang (Dr)
- [gmx-users] Can you help me ?
Mu Yuguang (Dr)
- [gmx-users] Energy Minimization problem
George Abadir
- [gmx-users] Energy Minimization problem
George Abadir
- [gmx-users] Segmentation Fault
George Abadir
- [gmx-users] Segmentation Fault
George Abadir
- [gmx-users] Segmentation Fault
George Abadir
- [gmx-users] Running GROMACS in PBS
Mark Abraham
- [gmx-users] Missing LJ interaction
Mark Abraham
- [gmx-users] topology doesnt match
Mark Abraham
- [gmx-users] Running GROMACS in PBS
Mark Abraham
- [gmx-users] error in .trr files
Mark Abraham
- [gmx-users] GROMACS 3.3.1 Parallel Run
Mark Abraham
- [gmx-users] Can you help me ?
Mark Abraham
- [gmx-users] DPPC bilayer simulation crash
Mark Abraham
- [gmx-users] Re: please help me
Mark Abraham
- [gmx-users] (no subject)
Mark Abraham
- [gmx-users] query regarding topology file
Mark Abraham
- [gmx-users] MD simulation of 2 molecules in a system
Mark Abraham
- [gmx-users] small molecules simulation
Mark Abraham
- [gmx-users] total simulation time for proteins in general
Mark Abraham
- [gmx-users] question about the total-energy of energy minimization
Mark Abraham
- [gmx-users] Hi all
Mark Abraham
- [gmx-users] Fwd: Warning: 1-4 interaction
Mark Abraham
- [gmx-users] Re: Ligand_charges
Mark Abraham
- [gmx-users] what are the options for implicit solvent in Gromacs?
Mark Abraham
- [gmx-users] Re: simulate a substrate-bound enzyme
Mark Abraham
- [gmx-users] lambda
Mark Abraham
- [gmx-users] it may b a bug.....i dont know
Mark Abraham
- [gmx-users] Please help me! double precision of gromacs !
Mark Abraham
- [gmx-users] time step size and non bond constraint
Mark Abraham
- [gmx-users] Fatal error: 126 atoms are not part of any of the T-Coupling groups
Mark Abraham
- [gmx-users] Question about the dihedral potential ....
Mark Abraham
- [gmx-users] Why did it start from the very beginning???
Mark Abraham
- [gmx-users] Location of files under Cygwin
Mark Abraham
- [gmx-users] do_dssp crashes on certain machines..
Mark Abraham
- [gmx-users] Energy Minimization problem
Mark Abraham
- [gmx-users] Location of files under Cygwin
Mark Abraham
- [gmx-users] OPLS-AA dihedral angles
Mark Abraham
- [gmx-users] Failed Energy Minimization
Mark Abraham
- [gmx-users] How to get topology file for OPLS
Mark Abraham
- [gmx-users] about T-Coupling groups
Mark Abraham
- [gmx-users] ffamber99p -- .hdb editing
Mark Abraham
- [gmx-users] DOPC lipid bilayer
Mark Abraham
- [gmx-users] Segmentation Fault
Mark Abraham
- [gmx-users] starting a peptide bilayer simulation run
Mark Abraham
- [gmx-users] Starting a simulation of a peptide lipid bilayer
Mark Abraham
- [gmx-users] Starting a simulation of a peptide
Mark Abraham
- [gmx-users] Torsional potential parametrization
Mark Abraham
- [gmx-users] PRODRUG itp-file is not understood by grompp
Anastassia Alexandrova
- [gmx-users] Problem with trjconv
Aline
- [gmx-users] ED analysis: help on cosine content and overlap of the fluctuations
Caterina Arcangeli
- [gmx-users] ED analysis: help on cosine content and overlap of the fluctuations
Caterina Arcangeli
- [gmx-users] ED analysis: help on cosine content and overlap of the fluctuatio
Caterina Arcangeli
- [gmx-users] question about the total-energy of energy minimization
Qiao Baofu
- [gmx-users] soft-core potential in combination with PME (sorry, again)
Jeroen van Bemmelen
- [gmx-users] soft-core potential in combination with PME (sorry, again)
Jeroen van Bemmelen
- [gmx-users] soft-core potential in combination with PME
Jeroen van Bemmelen
- [gmx-users] soft-core potential in combination with PME
Jeroen van Bemmelen
- [gmx-users] calculating properties of polyaromatics using gromacs
Fredrik Blomgren
- [gmx-users] ffamber99p -- .hdb editing
Stas Bobritsky
- [gmx-users] OPLS-AA dihedral angles
MURAT CETINKAYA
- [gmx-users] total simulation time for proteins in general
Priya Chandran
- [gmx-users] Infinite CNT
Daniel Cheong
- [gmx-users] Infinite CNT
Daniel Cheong
- [gmx-users] Infinite CNT
Daniel Cheong
- [gmx-users] Infinite CNT
Daniel Cheong
- [gmx-users] RMSD
Dhananjay
- [gmx-users] ED analysis: help on cosine content and overlap of the fluctuations
Alan Dodd
- [gmx-users] Preliminary report on benchmark on Opteron Cluster Infiniband on current CVS version
Luca Ferraro
- [gmx-users] [Re]: Preliminary report on benchmark on Opteron Cluster Infiniband on current CVS version
Luca Ferraro
- [gmx-users] Missing LJ interaction
Steve Fiedler
- [gmx-users] Missing LJ interaction
Steve Fiedler
- [gmx-users] other output format of Matrix Data than xpm format
Ran Friedman
- [gmx-users] ED analysis: help on cosine content and overlap of the fluctuations
Ran Friedman
- [gmx-users] Torsional potential parametrization
Jarvist Frost
- [gmx-users] Release of the R.E.D.-III tools
FyD
- [gmx-users] Question about the dihedral potential ....
Sergio Garay
- [gmx-users] soft-core potential in combination with PME (sorry, again)
Maik Goette
- [gmx-users] gromos
Ashish Gupta
- [gmx-users] hessian_matrix_from_ordered_trajectory
H.J.Risselada
- [gmx-users] on NVE and pressure
H.J.Risselada
- [gmx-users] Running GROMACS in PBS
Florian Haberl
- [gmx-users] other output format of Matrix Data than xpm format
Florian Haberl
- [gmx-users] Preliminary report on benchmark on Opteron Cluster Infiniband on current CVS version
Florian Haberl
- [gmx-users] do_dssp crashes on certain machines..
Florian Haberl
- [gmx-users] RMSD
Florian Haberl
- [gmx-users] Compile Gromacs for Blue Gene/L
Mike Hanby
- [gmx-users] Blue Gene compilation error "cannot compute sizeof (int) 77
Mike Hanby
- [gmx-users] pairs types for decoupling
Berk Hess
- [gmx-users] background charge
Berk Hess
- [gmx-users] other output format of Matrix Data than xpm format
Berk Hess
- [gmx-users] overcome the integration problem (installing CVS)
Berk Hess
- [gmx-users] overcome the integration problem (installing CVS)
Berk Hess
- [gmx-users] soft-core potential in combination with PME (sorry, again)
Berk Hess
- [gmx-users] wall_atomtype
Berk Hess
- [gmx-users] soft-core potential in combination with PME (sorry, again)
Berk Hess
- [gmx-users] ED analysis: help on cosine content and overlap ofthe fluctuatio
Berk Hess
- [gmx-users] Re:overcome the integration problem (installing CVS)
Berk Hess
- [gmx-users] soft-core potential in combination with PME (sorry, again)
Berk Hess
- [gmx-users] on NVE and pressure
Berk Hess
- [gmx-users] on NVE and pressure
Berk Hess
- [gmx-users] on NVE and pressure
Berk Hess
- [gmx-users] [Re]: Preliminary report on benchmark on Opteron Cluster Infinib
Berk Hess
- [gmx-users] Energy conservation in collision
Berk Hess
- [gmx-users] g_energy sum
Berk Hess
- [gmx-users] RE: Energy conservation in collision
Berk Hess
- [gmx-users] Energetics in collision
Janne Hirvi
- [gmx-users] Re: Energetics in collision
Janne Hirvi
- [gmx-users] Energy conservation in collision
Janne Hirvi
- [gmx-users] RE: Energy conservation in collision
Janne Hirvi
- [gmx-users] invalid order for directive position restraints
S O N A L I
- [gmx-users] query about making a pdb file
Eric Jakobsson
- [gmx-users] Compile Gromacs for Blue Gene/L
Eric Jakobsson
- [gmx-users] Compile Gromacs for Blue Gene/L
Eric Jakobsson
- [gmx-users] 2nd CMM 'Users Meet Developers' Workshop on QM/MM Simulations
Robert Johnson
- [gmx-users] 2nd CMM 'Users Meet Developers' Workshop on QM/MM Simulations
Robert Johnson
- [gmx-users] RMSD
Robert Johnson
- [gmx-users] overcome the integration problem (installing CVS)
Dr Itamar Kass
- [gmx-users] request for patch and test program from 'Speeding up Parallel GROMACS'
David Konerding
- [gmx-users] Using ffgmx and ffG43a1 topologies
Venky Krishna
- [gmx-users] Energy Minimization problem
Venky Krishna
- [gmx-users] Protein in SDS, GROMOS96 ff, MD crash - SDS molecule comes apart, LINCS error
Venky Krishna
- [gmx-users] Protein in SDS, GROMOS96 ff, MD crash - SDS molecule comes apart, LINCS error
Venky Krishna
- [gmx-users] ordered all-to-all patch
Carsten Kutzner
- [gmx-users] ordered all-to-all patch
Carsten Kutzner
- [gmx-users] request for patch and test program from 'Speeding up Parallel GROMACS'
Carsten Kutzner
- [gmx-users] MD simulation of 2 molecules in a system
Alif M Latif
- [gmx-users] Self-Assembly Method
Alif M Latif
- [gmx-users] it may b a bug.....i dont know
Justin Lemkul
- [gmx-users] system goes out of the water box
Justin Lemkul
- [gmx-users] ordered all-to-all patch
Marc F. Lensink
- [gmx-users] Warning: 1-4 interaction
Joern Lenz
- [gmx-users] Fwd: Warning: 1-4 interaction
Joern Lenz
- [gmx-users] Fatal error: 126 atoms are not part of any of the T-Coupling groups
Joern Lenz
- [gmx-users] grompp problem: ERROR 12 [file "test.pdb.top", line 97]: atom MW4 (Res T4P-10) has mass 0
Joern Lenz
- [gmx-users] Large VCM problems
Dechang Li
- [gmx-users] simulate a substrate-bound enzyme
Rui Li
- [gmx-users] Re: simulate a substrate-bound enzyme
Rui Li
- [gmx-users] about specbond.dat
Rui Li
- [gmx-users] How to get topology file for OPLS
Rui Li
- [gmx-users] How to get topology file for OPLS
Rui Li
- [gmx-users] about total charge
Rui Li
- [gmx-users] about T-Coupling groups
Rui Li
- [gmx-users] about T-Coupling groups
Rui Li
- [gmx-users] How to preserve the original sequence number
Rui Li
- [gmx-users] Compile Gromacs for Blue Gene/L
Erik Lindahl
- [gmx-users] --enable-threads fails.
Erik Lindahl
- [gmx-users] Running multiple kernels
Erik Lindahl
- [gmx-users] --enable-threads fails.
Erik Lindahl
- [gmx-users] BHIS for HIS?
Erik Lindahl
- [gmx-users] total simulation time for proteins in general
Erik Lindahl
- [gmx-users] Preliminary report on benchmark on Opteron Cluster Infiniband on current CVS version
Erik Lindahl
- [gmx-users] Re: Re; Failed Energy Minimization (solved!)
Erik Lindahl
- [gmx-users] GROMACS compilation problem
Erik Lindahl
- [gmx-users] GROMACS compilation problem
Erik Lindahl
- [gmx-users] g_energy sum
Erik Lindahl
- [gmx-users] g_energy sum
Erik Lindahl
- [gmx-users] g_energy sum
Erik Lindahl
- [gmx-users] Re: gmx-users Digest, Vol 36, Issue 76
Erik Lindahl
- [gmx-users] compare simulations between wt and mutate protein
Pedro Alexandre de Araújo Gomes Lapido Loureiro
- [gmx-users] DPPC bilayer simulation crash
Pedro Alexandre de Araújo Gomes Lapido Loureiro
- [gmx-users] how to submit replica exchange MD simulation
N-J.M. Macaluso
- [gmx-users] how to submit replica exchange MD simulation
N-J.M. Macaluso
- [gmx-users] Fatal error: 126 atoms are not part of any of the T-Coupling groups
Erik Marklund
- [gmx-users] Energy Minimization problem
Erik Marklund
- [gmx-users] Energetics in collision
Erik Marklund
- [gmx-users] about total charge
Erik Marklund
- [gmx-users] How can I make commands non-interactive?
Erik Marklund
- [gmx-users] error in .trr files
Rakesh Mishra
- [gmx-users] Re: bug in ffoplsaanb.itp?
David Mobley
- [gmx-users] pairs types for decoupling
David Mobley
- [gmx-users] modify C6 directly in FF using sigma and epsilon
David Mobley
- [gmx-users] modify C6 directly in FF using sigma and epsilon
David Mobley
- [gmx-users] modify C6 directly in FF using sigma and epsilon
David Mobley
- [gmx-users] modify C6 directly in FF using sigma and epsilon
David Mobley
- [gmx-users] Re: Ligand_charges
David Mobley
- [gmx-users] soft-core potential in combination with PME (sorry, again)
David Mobley
- [gmx-users] soft-core potential in combination with PME
David Mobley
- [gmx-users] invalid order for directive position restraints
David Mobley
- [gmx-users] request for dihedral PMF test system or complete alanine dipeptide topology file
David Mobley
- [gmx-users] request for dihedral PMF test system or complete alanine dipeptide topology file
David Mobley
- [gmx-users] Request for dihedral PMF test system or complete alanine dipeptide topology file
David Mobley
- [gmx-users] Query regarding PDB2gmx
Jagannath Mondal
- [gmx-users] query regarding topology file
Jagannath Mondal
- [gmx-users] query regarding a topology file
Jagannath Mondal
- [gmx-users] what are the options for implicit solvent in Gromacs?
Jagannath Mondal
- [gmx-users] what are the options for implicit solvent in Gromacs?
Jagannath Mondal
- [gmx-users] query regarding a topology file
Jagannath Mondal
- [gmx-users] ordered all-to-all patch
Chris Neale
- [gmx-users] ordered all-to-all patch
Chris Neale
- [gmx-users] protein membrane simulation
Chris Neale
- [gmx-users] internal consistency warning in grompp not repeated at end of stderr output
Chris Neale
- [gmx-users] internal consistency warning in grompp not repeated at end of stderr output
Chris Neale
- [gmx-users] Re: regarding DOPC lipid parameters
Chris Neale
- [gmx-users] Re: DOPC lipid bilayer
Chris Neale
- [gmx-users] re: starting a simulation of a peptide lipid bilayer
Chris Neale
- [gmx-users] request for dihedral PMF test system or complete alanine dipeptide topology file
Chris Neale
- [gmx-users] request for dihedral PMF test system or complete alanine dipeptide topology file
Chris Neale
- [gmx-users] Request for dihedral PMF test system or complete alanine dipeptide topology file
Chris Neale
- [gmx-users] hessian_matrix_from_ordered_trajectory
Sang-Min Park
- [gmx-users] g_rmsf -res bug
Marco Pasi
- [gmx-users] compare simulations between wt and mutate protein
Nguyen Hoang Phuong
- [gmx-users] Installing GROMACS 3.3.1 under IBM Power5 systems
Fiona Reid
- [gmx-users] Re: Failed Energy Minimization
Jennifer Rendell
- [gmx-users] new default value for emtol with gromacs 3.3
Jennifer Rendell
- [gmx-users] conversion of xtc to g87 (amber) format trajectory files/bounding box problem?
Daniel Rigden
- [gmx-users] GROMACS compilation problem
Daniel Rigden
- [gmx-users] GROMACS compilation problem
Daniel Rigden
- [gmx-users] more on converting xtc to g87
Daniel Rigden
- [gmx-users] gromacs -> amber trajectory conversion - resolution
Daniel Rigden
- [gmx-users] How can I make commands non-interactive?
Arthur Roberts
- [gmx-users] Problem with trjconv
Aline Rossi
- [gmx-users] Problem with trjconv
Aline Rossi
- [gmx-users] topology doesnt match
Robert Selwyne
- [gmx-users] UNABLE TO GENERATE TOPOLOGY
Robert Selwyne
- [gmx-users] distance restraints for a pdb file?
Robert Selwyne
- [gmx-users] overcome the integration problem (installing CVS)
Michael Shirts
- [gmx-users] Re:overcome the integration problem (installing CVS)
Michael Shirts
- [gmx-users] Re: conserved quantity
Michael Shirts
- [gmx-users] Running multiple kernels
Justin M. Shorb
- [gmx-users] Failed Energy Minimization
Justin M. Shorb
- [gmx-users] Re: Re: Failed Energy Minimization
Justin M. Shorb
- [gmx-users] Re: Re; Failed Energy Minimization (solved!)
Justin M. Shorb
- [gmx-users] Re: electrostatic and vdw energies from snapshots
Mauricio Pablo Sica
- [gmx-users] Re: Can you help me ? (Yang Ye)
Mauricio Pablo Sica
- [gmx-users] Re: simulate a substrate-bound enzyme
Mauricio Pablo Sica
- [gmx-users] Re:Re:Re: simulate a substrate-bound enzyme
Mauricio Pablo Sica
- [gmx-users] DPPC bilayer simulation crash
Michael Skaug
- [gmx-users] re: g_rms v. g_rmsdist
Gleb Solomentsev
- [gmx-users] No such moleculetype FE
Sonali
- [gmx-users] Re: request for dihedral PMF test system or complete alanine dipeptide topology file
Vojtěch Spiwok
- [gmx-users] Missing LJ interaction
David van der Spoel
- [gmx-users] positive 1-4 energy sum
David van der Spoel
- [gmx-users] protein membrane simulation
David van der Spoel
- [gmx-users] Prot_prep_problem
David van der Spoel
- [gmx-users] modify C6 directly in FF using sigma and epsilon
David van der Spoel
- [gmx-users] modify C6 directly in FF using sigma and epsilon
David van der Spoel
- [gmx-users] modify C6 directly in FF using sigma and epsilon
David van der Spoel
- [gmx-users] Blue Gene compilation error "cannot compute sizeof (int) 77
David van der Spoel
- [gmx-users] Compile Gromacs for Blue Gene/L
David van der Spoel
- [gmx-users] Query regarding PDB2gmx
David van der Spoel
- [gmx-users] benchmarking results
David van der Spoel
- [gmx-users] Permissions Problems with a New Installation
David van der Spoel
- [gmx-users] how to submit replica exchange MD simulation
David van der Spoel
- [gmx-users] benchmark numbers
David van der Spoel
- [gmx-users] gromos
David van der Spoel
- [gmx-users] benchmark numbers
David van der Spoel
- [gmx-users] benchmark numbers
David van der Spoel
- [gmx-users] internal consistency warning in grompp not repeated at end of stderr output
David van der Spoel
- [gmx-users] MD simulation of 2 molecules in a system
David van der Spoel
- [gmx-users] g_energy
David van der Spoel
- [gmx-users] energy
David van der Spoel
- [gmx-users] Woodcrest results
David van der Spoel
- [gmx-users] Woodcrest results
David van der Spoel
- [gmx-users] --enable-threads fails.
David van der Spoel
- [gmx-users] overcome the integration problem (installing CVS)
David van der Spoel
- [gmx-users] overcome the integration problem (installing CVS)
David van der Spoel
- [gmx-users] Ligand_charges
David van der Spoel
- [gmx-users] what are the options for implicit solvent in Gromacs?
David van der Spoel
- [gmx-users] [Fwd: g_sas in GROMACS]
David van der Spoel
- [gmx-users] [Fwd: g_sas in GROMACS]
David van der Spoel
- [gmx-users] Fatal error: Protein_A
David van der Spoel
- [gmx-users] Self-Assembly Method
David van der Spoel
- [gmx-users] Preliminary report on benchmark on Opteron Cluster Infiniband on current CVS version
David van der Spoel
- [gmx-users] Fatal error: 126 atoms are not part of any of the T-Coupling groups
David van der Spoel
- [gmx-users] [Re]: Preliminary report on benchmark on Opteron Cluster Infiniband on current CVS version
David van der Spoel
- [gmx-users] Question about the dihedral potential ....
David van der Spoel
- [gmx-users] distance restraints for a pdb file?
David van der Spoel
- [gmx-users] question energy
David van der Spoel
- [gmx-users] libXm.so.3
David van der Spoel
- [gmx-users] Changing cos_acceleration
David van der Spoel
- [gmx-users] Problem with trjconv
David van der Spoel
- [gmx-users] about specbond.dat
David van der Spoel
- [gmx-users] A special type of interaction
David van der Spoel
- [gmx-users] about T-Coupling groups
David van der Spoel
- [gmx-users] GROMACS compilation problem
David van der Spoel
- [gmx-users] How can I make commands non-interactive?
David van der Spoel
- [gmx-users] solubility of PVME in TIP5P
David van der Spoel
- [gmx-users] Infinite CNT
David van der Spoel
- [gmx-users] Infinite CNT
David van der Spoel
- [gmx-users] Infinite CNT
David van der Spoel
- [gmx-users] Extracting a sub-trajectory
David van der Spoel
- [gmx-users] Meaning of n-n hydrogen bond
David van der Spoel
- [gmx-users] Meaning of n-n hydrogen bond
David van der Spoel
- [gmx-users] rmdumbds problem
David van der Spoel
- [gmx-users] PVT-simulation
David van der Spoel
- [gmx-users] protein membrane simulation
Viswanadham Sridhara
- [gmx-users] Permissions Problems with a New Installation
Stephen P. Molnar, Ph.D.
- [gmx-users] modify C6 directly in FF using sigma and epsilon
Ryogo Sugitani
- [gmx-users] modify C6 directly in FF using sigma and epsilon
Ryogo Sugitani
- [gmx-users] GROMACS 3.3.1 Parallel Run
Sunny
- [gmx-users] UNABLE TO GENERATE TOPOLOGY
Subhrangshu Supakar
- [gmx-users] Running GROMACS in PBS
Triguero, Luciano O
- [gmx-users] topology doesnt match
Triguero, Luciano O
- [gmx-users] grompp error
Triguero, Luciano O
- [gmx-users] grompp error
Triguero, Luciano O
- [gmx-users] g_msd and Diffusion coefficient
Yossi Tsfadia
- [gmx-users] wall_atomtype
Manuel Valera
- [gmx-users] Protein in SDS, GROMOS96 ff, MD crash - SDS molecule comes apart, LINCS error
Venky
- [gmx-users] No such moleculetype FE
Venky
- [gmx-users] libXm.so.3
WILLIAM R WELCH
- [gmx-users] query regarding a topology file
Dallas B. Warren
- [gmx-users] Please help me! double precision of gromacs !
Dallas B. Warren
- [gmx-users] system goes out of the water box
Dallas B. Warren
- [gmx-users] compare simulations between wt and mutate protein
Tsjerk Wassenaar
- [gmx-users] re: g_rms v. g_rmsdist
Tsjerk Wassenaar
- [gmx-users] other output format of Matrix Data than xpm format
Tsjerk Wassenaar
- [gmx-users] protein membrane simulation
Tsjerk Wassenaar
- [gmx-users] other output format of Matrix Data than xpm format
Tsjerk Wassenaar
- [gmx-users] electrostatic and vdw energies from snapshots
Tsjerk Wassenaar
- [gmx-users] protein membrane simulation
Tsjerk Wassenaar
- [gmx-users] hessian_matrix_from_ordered_trajectory
Tsjerk Wassenaar
- [gmx-users] protein membrane simulation
Tsjerk Wassenaar
- [gmx-users] Using ffgmx and ffG43a1 topologies
Tsjerk Wassenaar
- [gmx-users] calculating properties of polyaromatics using gromacs
Tsjerk Wassenaar
- [gmx-users] small molecules simulation
Tsjerk Wassenaar
- [gmx-users] BHIS for HIS?
Tsjerk Wassenaar
- [gmx-users] Prot_prep_query
Tsjerk Wassenaar
- [gmx-users] query regarding a topology file
Tsjerk Wassenaar
- [gmx-users] Fatal error: Protein_A
Tsjerk Wassenaar
- [gmx-users] UNABLE TO GENERATE TOPOLOGY
Tsjerk Wassenaar
- [gmx-users] Problems with pdb2gmx simulating a iron-sulfur cluster
Tsjerk Wassenaar
- [gmx-users] regarding DOPC lipid parameters
Tsjerk Wassenaar
- [gmx-users] about total charge
Tsjerk Wassenaar
- [gmx-users] DOPC lipid bilayer
Tsjerk Wassenaar
- [gmx-users] Problems with pdb2gmx simulating a iron-sulfur cluster
Tsjerk Wassenaar
- [gmx-users] Problems with pdb2gmx simulating a iron-sulfur cluster
Tsjerk Wassenaar
- [gmx-users] ffamber99p -- .hdb editing
Tsjerk Wassenaar
- [gmx-users] grompp error
Tsjerk Wassenaar
- [gmx-users] Segmentation Fault
Tsjerk Wassenaar
- [gmx-users] more on converting xtc to g87
Tsjerk Wassenaar
- [gmx-users] Protein in SDS, GROMOS96 ff, MD crash - SDS molecule comes apart, LINCS error
Tsjerk Wassenaar
- [gmx-users] starting a simulation of a peptide lipid bilayer
Tsjerk Wassenaar
- [gmx-users] Problem with trjconv
Tsjerk Wassenaar
- [gmx-users] Protein in SDS, GROMOS96 ff, MD crash - SDS molecule comes apart, LINCS error
Tsjerk Wassenaar
- [gmx-users] Starting a simulation of a peptide lipid bilayer
Tsjerk Wassenaar
- [gmx-users] To Tsjerk "Starting a simulation of a peptide lipid bilayer"
Tsjerk Wassenaar
- [gmx-users] Starting a simulation of a peptide
Tsjerk Wassenaar
- [gmx-users] Re: gmx-users Digest, Vol 36, Issue 76
Tsjerk Wassenaar
- [gmx-users] slight mistake in data angdist.xvg file
Rongliang Wu
- [gmx-users] BHIS for HIS?
Rongliang Wu
- [gmx-users] Compile Gromacs for Blue Gene/L
Yang Ye
- [gmx-users] Can you help me ?
Yang Ye
- [gmx-users] energy minimization error
Yang Ye
- [gmx-users] overcome the integration problem (installing CVS)
Yang Ye
- [gmx-users] about T-Coupling groups
Yang Ye
- [gmx-users] ffamber99p -- .hdb editing
Yang Ye
- [gmx-users] QM/MM investigate phosphorylation/dephosphorylation in kinase
Qiang Zhong
- [gmx-users] starting a peptide bilayer simulation run
nur avneet
- [gmx-users] starting a simulation of a peptide lipid bilayer
nur avneet
- [gmx-users] Starting a simulation of a peptide lipid bilayer
nur avneet
- [gmx-users] To Tsjerk "Starting a simulation of a peptide lipid bilayer"
nur avneet
- [gmx-users] Starting a simulation of a peptide
nur avneet
- [gmx-users] Meaning of n-n hydrogen bond
chetana baliga
- [gmx-users] Meaning of n-n hydrogen bond
ksr at chemistry.umass.edu
- [gmx-users] Meaning of n-n hydrogen bond
ksr at chemistry.umass.edu
- [gmx-users] Energy minimization: problems with ramachanrad score
dimitry.a.suplatov
- [gmx-users] do_dssp crashes on certain machines..
pascal.baillod at epfl.ch
- [gmx-users] Force Field Problem
selent at gmx.de
- [gmx-users] protein constrained, ligand ot constrained
mollica.luca at hsr.it
- [gmx-users] compare simulations between wt and mutate protein
spitaleri.andrea at hsr.it
- [gmx-users] background charge
baloilgiullare at interfree.it
- [gmx-users] about toplogy file
amit jain
- [gmx-users] solubility of PVME in TIP5P
kitty ji
- [gmx-users] Re: gmx-users Digest, Vol 36, Issue 75
jiqing
- [gmx-users] Re: gmx-users Digest, Vol 36, Issue 76
jiqing
- [gmx-users] lambda
özge kül
- [gmx-users] fatal error
özge kül
- [gmx-users] 2nd CMM 'Users Meet Developers' Workshop on QM/MM Simulations
yuemin liu
- [gmx-users] protein membrane simulation
maite lopez
- [gmx-users] protein membrane simulation
maite lopez
- [gmx-users] protein membrane simulation
maite lopez
- [gmx-users] on NVE and pressure
lorix
- [gmx-users] on NVE and pressure
lorix
- [gmx-users] on NVE and pressure
lorix
- [gmx-users] Energy minimization: problems with ramachanrad score
marcos
- [gmx-users] Problems with pdb2gmx simulating a iron-sulfur cluster
martinez
- [gmx-users] Problems with pdb2gmx simulating a iron-sulfur cluster
martinez
- [gmx-users] Problems with pdb2gmx simulating a iron-sulfur cluster
martinez
- [gmx-users] Problems with pdb2gmx simulating a iron-sulfur cluster
martinez
- [gmx-users] positive 1-4 energy sum
merc mertens
- [gmx-users] electrostatic and vdw energies from snapshots
merc mertens
- [gmx-users] electrostatic and vdw energies from snapshots
merc mertens
- [gmx-users] g_energy sum
merc mertens
- [gmx-users] g_energy sum
merc mertens
- [gmx-users] g_energy sum
merc mertens
- [gmx-users] protein constrained, ligand ot constrained
Lars.Schaefer at mpi-bpc.mpg.de
- [gmx-users] Fatal error: Protein_A
gbastian at pasteur.fr
- [gmx-users] Fatal error: Protein_A
gbastian at pasteur.fr
- [gmx-users] Prot_prep_problem
pkmukher
- [gmx-users] Prot_prep_problem
pkmukher
- [gmx-users] Prot_prep_query
pkmukher
- [gmx-users] Prot_prep_query
pkmukher
- [gmx-users] Ligand_charges
pkmukher
- [gmx-users] Re: Ligand_charges
pkmukher
- [gmx-users] Extracting a sub-trajectory
quantrum75
- [gmx-users] regarding DOPC lipid parameters
naga raju
- [gmx-users] DOPC lipid bilayer
naga raju
- [gmx-users] building lipid bilayer
naga raju
- [gmx-users] PVT-simulation
Jiang ran
- [gmx-users] it may b a bug.....i dont know
uma reddy
- [gmx-users] small molecules simulation
root
- [gmx-users] Hi all
ann rose
- [gmx-users] benchmarking results
vipin sachdeva
- [gmx-users] benchmark numbers
vipin sachdeva
- [gmx-users] benchmark numbers
vipin sachdeva
- [gmx-users] benchmark numbers
vipin sachdeva
- [gmx-users] benchmark numbers
vipin sachdeva
- [gmx-users] Woodcrest results
vipin sachdeva
- [gmx-users] Woodcrest results
vipin sachdeva
- [gmx-users] Woodcrest results
vipin sachdeva
- [gmx-users] --enable-threads fails.
vipin sachdeva
- [gmx-users] --enable-threads fails.
vipin sachdeva
- [gmx-users] question energy
Elias santos
- [gmx-users] Can you help me ?
job560 at sohu.com
- [gmx-users] Please help me! double precision of gromacs !
job560 at sohu.com
- [gmx-users] Prot_prep_problem
andrea spitaleri
- [gmx-users] Prot_prep_problem
andrea spitaleri
- [gmx-users] on NVE and pressure
andrew stelzer
- [gmx-users] Changing cos_acceleration
toma0052
- [gmx-users] Location of files under Cygwin
toma0052
- [gmx-users] Location of files under Cygwin
toma0052
- [gmx-users] system goes out of the water box
bmmothan at ucalgary.ca
- [gmx-users] ordered all-to-all patch
chris.neale at utoronto.ca
- [gmx-users] re: building lipid bilayer
chris.neale at utoronto.ca
- [gmx-users] time step size and non bond constraint
kanin wichapong
- [gmx-users] Why did it start from the very beginning???
liu xin
- [gmx-users] Why did it start from the very beginning???
liu xin
- [gmx-users] Fatal error: Protein_A
leafyoung81-group at yahoo.com
- [gmx-users] g_energy
mahbubeh zarrabi
- [gmx-users] energy
mahbubeh zarrabi
- [gmx-users] A special type of interaction
Александр Журавлев
- [gmx-users] rmdumbds problem
Александр Журавлев
- [gmx-users] energy minimization error
李睿
- [gmx-users] (no subject)
黄永棋
Last message date:
Mon Apr 30 11:45:59 CEST 2007
Archived on: Thu Nov 14 12:03:35 CET 2013
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