[gmx-users] Meaning of n-n hydrogen bond

David van der Spoel spoel at xray.bmc.uu.se
Wed Apr 25 22:32:02 CEST 2007


ksr at chemistry.umass.edu wrote:
> Chetana,
> 
> You need to look at the structure of these residues. Several amino acids,
> notably Asp and Asn can i to i sidechain to backbone h-bond. For those two it
> typically occurs in the alphaL conformational space (what David was alluding
> to), which is why Asp and Asn are (relatively) often found there.
> 
> Peace,
> 
>
Gly can do it in the backbone too.

-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se
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