[gmx-users] GROMACS vs. AMBER speed comparison?

[SeungPyo Hong]

Hi, gmx-users,

Recently I have try to use AMBER 9 for the simulation of protein with about
300 residues.
Surprisingly, I found that AMBER is far slower than GROMACS; GROMACS is
about twice faster.
I can not figure out the reason.
Why is GROMACS faster than AMBER?
Could anybody know the reason?

Or have I made a mistake in AMBER or GROMACS simulation?

If anybody has compared the speed of AMBER and GROMACS, please tell me the
result.

Thank you~

-- 
--------------------------------------------------
'God used beautiful mathematics in creating the world.'
-Paul Dirac
'But he created too many object.'
-Seungpyo Hong

Seungpyo Hong
Master student at PBIL(Protein BioInformatics Lab.) in KAIST, Daejeon Korea
Tel. (82)-18-372-2468
sphong_ at kaist.ac.kr
sp1020 at gmail.com
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