[gmx-users] insert protein in membrane again

Justin A. Lemkul jalemkul at vt.edu
Tue Dec 18 15:45:56 CET 2007


Quoting Magnus Andersson <magnus.andersson at chalmers.se>:

> Hi again,
>
> As I use genbox with my .gro file holding the protein and my .gro file
> containing the membrane I get the error message:
>
> Fatal error: Invalid line in protein.gro for atom 2296:
>
> There is no atom 2296 in protein.gro...

Right, so how many atoms are in protein.gro?  And what does the second line in
the .gro file say?  They probably don't match up, so you need to fix that line.

-Justin

>
> I must be missing something?
>
> /Magnus
>
>
> --
> Magnus Andersson
>
> Chalmers University of Technology
> Dept of Chemistry and Biological Engineering
> Email: magnus.andersson at chalmers.se
> Homepage:  http://www.csb.gu.se/neutze/
> Phone: +46 (0)31-786 3917
> Fax: +46 (0)31-786 3910
> Lundberg Laboratory
> Medicinaregatan 9e
> SE-413 90 Göteborg
> Sweden
>
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========================================

Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul at vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/

========================================



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