[gmx-users] genbox using TIP3P?--Nevermind

[WILLIAM R WELCH]

Nevermind, I made one using VMD, it solvated my protien just fine. 

----- Original Message -----
From: WILLIAM R WELCH <wwelch at wisc.edu>
Date: Friday, February 2, 2007 3:25 pm
Subject: [gmx-users] genbox using TIP3P?
To: Discussion list for GROMACS users <gmx-users at gromacs.org>


> Hello
>  I would like to use the TIP3P model in my calculation, and I would 
> like to be able to use genbox to solvate a pepetide, but there is no 
> TIP3P.gro coordinate file in the program.  I there such a coordinate 
> file available?
>  Will
>  
>  ----- Original Message -----
>  From: sridhar at cdfd.org.in
>  Date: Friday, February 2, 2007 11:46 am
>  Subject: [gmx-users] fitting procedure in g_rmsf
>  To: gmx-users at gromacs.org
>  
>  
>  > Hello,
>  >  
>  >  I have a rather basic query.
>  >  I want to know which atoms of the reference structure will be used 
> for
>  >  fitting , in g_rmsf program.
>  >  In the program g_rms there are separate options for fitting and
>  >  calcualation of rmsd. I wonder if it is possible for the user to 
>  > select a
>  >  set of atoms for fitting and calculate the rmsf over another range 
> of
>  >  atoms or the whole protein, similar as in g_rms program.
>  >  
>  >  Waiting for your suggessions.
>  >  
>  >  sridhar
>  >  
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