February 2007 Archives by thread

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Starting: Thu Feb 1 01:08:44 CET 2007
Ending: Wed Feb 28 21:43:00 CET 2007
Messages: 390

[gmx-users] Generating Structures from Covariance Matrix Eigenvectors Robert Johnson
- [gmx-users] Generating Structures from Covariance Matrix Eigenvectors David van der Spoel
  - [gmx-users] Generating Structures from Covariance Matrix Eigenvectors Tsjerk Wassenaar
[gmx-users] Re: 3D-density Tsjerk Wassenaar
[gmx-users] dispersion correction and heterogeneous systems Chris Neale
[gmx-users] genbox peptide-membrane simulation maite lopez
- [gmx-users] genbox peptide-membrane simulation Tsjerk Wassenaar
[gmx-users] more than 5 digits of the number of atoms and residue Cherry Y. Yates
- [gmx-users] more than 5 digits of the number of atoms and residue Yang Ye
- [gmx-users] more than 5 digits of the number of atoms and residue David van der Spoel
  - [gmx-users] more than 5 digits of the number of atoms and residue Erik Lindahl
[gmx-users] an alternating current electric field can be set or not? Hu Zhongqiao
- [gmx-users] an alternating current electric field can be set or not? David van der Spoel
[gmx-users] low CPU load percentages on 16 core box with CentOS4.4 Makoto Yoneya
- [gmx-users] low CPU load percentages on 16 core box with CentOS4.4 Mark Abraham
- [gmx-users] low CPU load percentages on 16 core box with CentOS4.4 Makoto Yoneya
  - [gmx-users] low CPU load percentages on 16 core box with CentOS4.4 Mark Abraham
  - [gmx-users] low CPU load percentages on 16 core box with CentOS4.4 David van der Spoel
[gmx-users] dispersion correction and heterogeneous systems Michael Shirts
- [gmx-users] dispersion correction and heterogeneous systems Erik Lindahl
[gmx-users] fitting procedure in g_rmsf sridhar at cdfd.org.in
- [gmx-users] genbox using TIP3P? WILLIAM R WELCH
  - [gmx-users] genbox using TIP3P?--Nevermind WILLIAM R WELCH
  - [gmx-users] genbox using TIP3P? Mark Abraham
- [gmx-users] fitting procedure in g_rmsf Mark Abraham
[gmx-users] Are trj and tpb files still used? David van der Spoel
[gmx-users] fitting procedure in g_rmsf sridhar at cdfd.org.in
[gmx-users] Relative Constraints on atoms Srinivas Ramachandran
- [gmx-users] Relative Constraints on atoms Robert Johnson
  - [gmx-users] Relative Constraints on atoms Mark Abraham
    - [gmx-users] Relative Constraints on atoms Robert Johnson
    - [gmx-users] Relative Constraints on atoms Mark Abraham
[gmx-users] Re: gmx-users Digest, Vol 34, Issue 4 Eudes Fileti
- [gmx-users] Re: gmx-users Digest, Vol 34, Issue 4 David van der Spoel
[gmx-users] How can I uninstall the old version? 李睿
[gmx-users] How can I uninstall the old version? 王准
[gmx-users] forcefield problems - advice needed Lubos Vrbka
- [gmx-users] forcefield problems - advice needed Mark Abraham
[gmx-users] clustering and representative structure Carlos Javier Nuñez Aguero
- [gmx-users] clustering and representative structure Nikos Sgourakis
[gmx-users] low CPU load percentages on 16 core box with CentOS4.4 Makoto Yoneya
[gmx-users] problem regarding do_dssp sangeeta
- [gmx-users] problem regarding do_dssp Mark Abraham
  - [gmx-users] problem regarding do_dssp sangeeta
  - [gmx-users] problem regarding do_dssp sangeeta
    - [gmx-users] problem regarding do_dssp Yang Ye
    - [gmx-users] problem regarding do_dssp sangeeta
    - [gmx-users] problem regarding do_dssp sangeeta
[gmx-users] problem regarding do_dssp Naser, Md Abu
[gmx-users] RMSD of the same protein in different solvent boxes Afonso Duarte
- [gmx-users] RMSD of the same protein in different solvent boxes Tsjerk Wassenaar
- [gmx-users] RMSD of the same protein in different solvent boxes Ran Friedman
- [gmx-users] RMSD of the same protein in different solvent boxes Florian Haberl
[gmx-users] Re: RMSD of the same protein in different solvent boxes Afonso Duarte
Re.[gmx-users] problem regarding do_dssp Afonso Duarte
[gmx-users] fixing protein during energy minimization Vaibhav Saraf
- [gmx-users] fixing protein during energy minimization Mark Abraham
  - [gmx-users] The subgroup in Hessian matrix Tanping Li
[gmx-users] script for renumbering atoms/bonds/angles etc Anirban Mudi
- [gmx-users] script for renumbering atoms/bonds/angles etc Mark Abraham
  - [gmx-users] script for renumbering atoms/bonds/angles etc Tsjerk Wassenaar
[gmx-users] Gromacs 96 and POPE Ugur Akgun
- [gmx-users] Gromacs 96 and POPE Steffen Wolf
[gmx-users] eigenrmsf in COMBINED ESSENTIAL DYNAMICS sridhar at cdfd.org.in
- [gmx-users] eigenrmsf in COMBINED ESSENTIAL DYNAMICS Tsjerk Wassenaar
[gmx-users] fixing protein during energy minimization Vaibhav Saraf
- [gmx-users] fixing protein during energy minimization Mark Abraham
- [gmx-users] fixing protein during energy minimization Mahnam
  - [gmx-users] fixing protein during energy minimization Tsjerk Wassenaar
    - [gmx-users] fixing protein during energy minimization Mark Abraham
[gmx-users] problem with free energy calculations Michael Brunsteiner
- [gmx-users] problem with free energy calculations Berk Hess
- [gmx-users] problem with free energy calculations David Mobley
[gmx-users] Including urea in simulations? Hans-Christian Becker
- [gmx-users] Including urea in simulations? Mark Abraham
- [gmx-users] Including urea in simulations? Eugenia Polverini
  - [gmx-users] Including urea in simulations? Tsjerk Wassenaar
[gmx-users] Dummy Problem. Anthony Cruz
- [gmx-users] Dummy Problem. Mark Abraham
  - [gmx-users] Dummy Problem. Anthony Cruz
    - [gmx-users] Dummy Problem. Mark Abraham
[gmx-users] Distance restraints zhong qiang
- [gmx-users] Distance restraints Mark Abraham
[gmx-users] FCC cell Eudes Fileti
- [gmx-users] FCC cell Mark Abraham
[gmx-users] GROMOS96 and POPE Ugur Akgun
- [gmx-users] GROMOS96 and POPE Steffen Wolf
[gmx-users] Re: problem with free energy calculations Michael Brunsteiner
- [gmx-users] Re: problem with free energy calculations Berk Hess
[gmx-users] GROMOS 96 - POPE Ugur Akgun
- [gmx-users] GROMOS 96 - POPE Mark Abraham
[gmx-users] H-bond problems Marcelo Fabricio Masman
[gmx-users] vdW parameters and atoms moving too fast Nicolas SAPAY
- [gmx-users] vdW parameters and atoms moving too fast Mark Abraham
  - [gmx-users] vdW parameters and atoms moving too fast Nicolas SAPAY
    - [gmx-users] vdW parameters and atoms moving too fast Mark Abraham
    - [gmx-users] vdW parameters and atoms moving too fast Nicolas SAPAY
[gmx-users] how to create a .top file from a .gro? Aline
- [gmx-users] how to create a .top file from a .gro? Mark Abraham
[gmx-users] GROMACS API? Ben FrantzDale
- [gmx-users] GROMACS API? Mark Abraham
  - [gmx-users] GROMACS API? Ben FrantzDale
    - [gmx-users] GROMACS API? Mark Abraham
- [gmx-users] GROMACS API? Martin Höfling
- [gmx-users] GROMACS API? Erik Lindahl
  - [gmx-users] GROMACS API? Ben FrantzDale
    - [gmx-users] GROMACS API? Erik Lindahl
[gmx-users] Range checking error Ibrahim M. Moustafa
[gmx-users] Re: Distance restraints zhong qiang
[gmx-users] segementation fault using g_hbond Joern Lenz
[gmx-users] ions coupl to protein in .top zhong qiang
- [gmx-users] ions coupl to protein in .top Yang Ye
  - [gmx-users] ions coupl to protein in .top Mark Abraham
- [gmx-users] ions coupl to protein in .top Mark Abraham
[gmx-users] Guanidinium chloride Eugenia Polverini
- [gmx-users] Guanidinium chloride Mark Abraham
[gmx-users] problems with QM/MM in gromacs-CPMD Gireesh M Krishnan
[gmx-users] g_mindist mahbubeh zarrabi
- [gmx-users] g_mindist Mark Abraham
[gmx-users] why protein comes out of the box sangeeta kundu
- [gmx-users] why protein comes out of the box Erik Marklund
  - [gmx-users] why protein comes out of the box sangeeta kundu
    - [gmx-users] why protein comes out of the box Erik Marklund
- [gmx-users] why protein comes out of the box Mark Abraham
  - [gmx-users] why protein comes out of the box sangeeta kundu
[gmx-users] Error:4 atoms are not part of any of the T-Coupling groups Qiang Zhong
- [gmx-users] Error:4 atoms are not part of any of the T-Coupling groups Mark Abraham
- [gmx-users] Error:4 atoms are not part of any of the T-Coupling groups Yang Ye
[gmx-users] problems with QM/MM in gromacs-CPMD Pradip K Biswas
[gmx-users] Pradip** Pradip K Biswas
[gmx-users] Re:Error:4 atoms are not part of any of the T-Couplinggroups Qiang Zhong
[gmx-users] Help with energygrp_excl toma0052
[gmx-users] surface area emra Heshmati
- [gmx-users] surface area Mark Abraham
- [gmx-users] surface area Esther Caballero-Manrique
[gmx-users] eigenrmsf in COMBINED ESSENTIAL DYNAMICS sridhar at cdfd.org.in
- [gmx-users] eigenrmsf in COMBINED ESSENTIAL DYNAMICS Tsjerk Wassenaar
[gmx-users] using pull code with coarse grained model Ashish Gupta
[gmx-users] fitting procedure in g_rmsf sridhar at cdfd.org.in
- [gmx-users] fitting procedure in g_rmsf Mark Abraham
[gmx-users] problem with free energy calculations chris.neale at utoronto.ca
- [gmx-users] problem with free energy calculations Berk Hess
[gmx-users] lesstif compile 李睿
- [gmx-users] lesstif compile Martin Höfling
- [gmx-users] lesstif compile Avell Diroll
[gmx-users] Problem installing gromacs-3.2.1 with pme.c patch Eva Santos
- [gmx-users] Problem installing gromacs-3.2.1 with pme.c patch Carsten Kutzner
[gmx-users] Large branched and crosslinked polymer Luke Pestl
- [gmx-users] Large branched and crosslinked polymer Mark Abraham
[gmx-users] Problem installing gromacs-3.2.1 with pme.c patch Eva Santos
[gmx-users] segmentation fault using g_hbond Joern Lenz
- [gmx-users] segmentation fault using g_hbond Dallas B. Warren
  - [gmx-users] A question for em before the INM analysis Tanping Li
    - [gmx-users] Help: the coordinates in INM modes Tanping Li
    - [gmx-users] Help again: the projection on normal modes Tanping Li
[gmx-users] make_ndx not working Camilo Calderon
- [gmx-users] make_ndx not working Dallas B. Warren
[gmx-users] Need basic install help please Russell Green
- [gmx-users] Need basic install help please Dallas B. Warren
  - [gmx-users] Need basic install help please Russell Green
    - [gmx-users] Need basic install help please Dallas B. Warren
    - [gmx-users] Need basic install help please Russell Green
    - [gmx-users] Need basic install help please Dallas B. Warren
    - [gmx-users] Need basic install help please Mark Abraham
    - [gmx-users] Need basic install help please Russell Green
    - [gmx-users] Need basic install help please Russell Green
    - [gmx-users] Need basic install help please Russell Green
    - [gmx-users] Need basic install help please Balamurugan.R
    - [gmx-users] Need basic install help please Mark Abraham
    - [gmx-users] Need basic install help please Russell Green
    - [gmx-users] Need basic install help please Mark Abraham
    - [gmx-users] Need basic install help please Mark Abraham
    - [gmx-users] using g_wham to read in pdo files Arneh Babakhani
- [gmx-users] Need basic install help please Martin Höfling
[gmx-users] itp files in membrane simulation priyanka srivastava
[gmx-users] membrane set up!!! priyanka srivastava
[gmx-users] problem still lies regarding dssp sangeeta kundu
- [gmx-users] problem still lies regarding dssp Mark Abraham
[gmx-users] problem still lies regarding dssp Naser, Md Abu
- [gmx-users] problem still lies regarding dssp sangeeta kundu
[gmx-users] loss of information trr xtc Joern Lenz
- [gmx-users] loss of information trr xtc Bert de Groot
- [gmx-users] loss of information trr xtc Erik Marklund
- [gmx-users] loss of information trr xtc Qiao Baofu
  - [gmx-users] loss of information trr xtc Mark Abraham
[gmx-users] Pressure coupling question toma0052
- [gmx-users] Pressure coupling question David van der Spoel
[gmx-users] gromacs-3.3 build on linux. make fails susan james
- [gmx-users] Urey bradley term in the sum of energies Nicolas SAPAY
  - [gmx-users] Urey bradley term in the sum of energies Mark Abraham
- [gmx-users] gromacs-3.3 build on linux. make fails Mark Abraham
- [gmx-users] gromacs-3.3 build on linux. make fails David van der Spoel
  - [gmx-users] gromacs-3.3 build on linux. make fails susan james
    - [gmx-users] gromacs-3.3 build on linux. make fails David van der Spoel
    - [gmx-users] gromacs-3.3 build on linux. make fails susan james
[gmx-users] Speed of MD with a uniform electric field Hu Zhongqiao
- [gmx-users] Speed of MD with a uniform electric field David van der Spoel
[gmx-users] How to display file .xvg,how to use my_dssp Qiang Zhong
- [gmx-users] How to display file .xvg,how to use my_dssp Yang Ye
- [gmx-users] How to display file .xvg,how to use my_dssp Dallas B. Warren
[gmx-users] Nucleic Acids -- Protonate ? Viswanadham Sridhara
- [gmx-users] Nucleic Acids -- Protonate ? Mark Abraham
  - [gmx-users] Nucleic Acids -- Protonate ? Maik Goette
    - [gmx-users] Nucleic Acids -- Protonate ? Viswanadham Sridhara
- [gmx-users] Nucleic Acids -- Protonate ? David van der Spoel
- [gmx-users] Nucleic Acids -- Protonate ? Yang Ye
[gmx-users] Re: Speed of MD with a uniform electric field Hu Zhongqiao
[gmx-users] question about genbox -vdwd Qiao Baofu
[gmx-users] problem still lies regarding dssp Naser, Md Abu
- [gmx-users] problem still lies regarding dssp sangeeta kundu
[gmx-users] restarting a sorted shuffled trajectory Stéphane Téletchéa
[gmx-users] restarting a sorted shuffled trajectory Alan Dodd
- [gmx-users] restarting a sorted shuffled trajectory Yang Ye
[gmx-users] restarting a sorted shuffled trajectory chris.neale at utoronto.ca
- [gmx-users] restarting a sorted shuffled trajectory Stéphane Téletchéa
FudgeLJ in ffamber - Was: [gmx-users] Re: fudgeQQ (again ...) Jones de Andrade
- FudgeLJ in ffamber - Was: [gmx-users] Re: fudgeQQ (again ...) Erik Lindahl
  - FudgeLJ in ffamber - Was: [gmx-users] Re: fudgeQQ (again ...) Jones de Andrade
    - FudgeLJ in ffamber - Was: [gmx-users] Re: fudgeQQ (again ...) Erik Lindahl
    - FudgeLJ in ffamber - Was: [gmx-users] Re: fudgeQQ (again ...) Jones de Andrade
    - FudgeLJ in ffamber - Was: [gmx-users] Re: fudgeQQ (again ...) David van der Spoel
    - FudgeLJ in ffamber - Was: [gmx-users] Re: fudgeQQ (again ...) Jones de Andrade
    - FudgeLJ in ffamber - Was: [gmx-users] Re: fudgeQQ (again ...) David van der Spoel
    - FudgeLJ in ffamber - Was: [gmx-users] Re: fudgeQQ (again ...) Erik Lindahl
[gmx-users] Atoms in the .top ...... Viswanadham Sridhara
- [gmx-users] Atoms in the .top ...... Tsjerk Wassenaar
  - [gmx-users] Atoms in the .top ...... Viswanadham Sridhara
    - [gmx-users] Atoms in the .top ...... Dallas B. Warren
[gmx-users] Bug fixed in Gromacs-CPMD qmmm interface Pradip K Biswas
- [gmx-users] Re: Bug fixed in Gromacs-CPMD qmmm interface Christian Seifert
[gmx-users] LINCS WARNING Qiang Zhong
- [gmx-users] LINCS WARNING Dallas B. Warren
- [gmx-users] LINCS WARNING Mark Abraham
[gmx-users] Can we compare results from versions 3.2 & 3.3.1 chetana baliga
- [gmx-users] Can we compare results from versions 3.2 & 3.3.1 Berk Hess
[gmx-users] sigma-epsilon to c6-c12 priyanka srivastava
- [gmx-users] sigma-epsilon to c6-c12 Mark Abraham
- [gmx-users] sigma-epsilon to c6-c12 carl caleman
[gmx-users] MD of crystal Nicolas Bock
- [gmx-users] MD of crystal David van der Spoel
- [gmx-users] MD of crystal carl caleman
  - [gmx-users] MD of crystal Nicolas Bock
    - [gmx-users] Building Topology of a Drug (using the ff of your choice) Arneh Babakhani
    - [gmx-users] Building Topology of a Drug (using the ff of your choice) Mitchell J Stanton-Cook
    - [gmx-users] Building Topology of a Drug (using the ff of your choice) Arneh Babakhani
    - [gmx-users] Building Topology of a Drug (using the ff of your choice) David Mobley
    - [gmx-users] MD of crystal David van der Spoel
    - [gmx-users] MD of crystal Nicolas Bock
    - [gmx-users] MD of crystal Tsjerk Wassenaar
    - [gmx-users] MD of crystal David van der Spoel
    - [gmx-users] MD of crystal Nicolas Bock
    - [gmx-users] MD of crystal Mark Abraham
[gmx-users] xpm format srinivas ramachandran
- [gmx-users] xpm format Mark Abraham
  - [gmx-users] xpm format Berk Hess
[gmx-users] g_chi non-standard definition of phi and psi chris.neale at utoronto.ca
[gmx-users] g_chi non-standard definition of phi and psi chris.neale at utoronto.ca
[gmx-users] Polymer exploding kitty ji
[gmx-users] Add ions on protein Qiang Zhong
- [gmx-users] Add ions on protein Mark Abraham
[gmx-users] Constant normal pressure simulation toma0052
- [gmx-users] Constant normal pressure simulation Robert Johnson
[gmx-users] question Elias santos
- [gmx-users] question Tsjerk Wassenaar
[gmx-users] Impact velocity Janne Hirvi
- [gmx-users] Impact velocity David van der Spoel
- [gmx-users] Impact velocity Robert Johnson
[gmx-users] Undocumented mdp options Sunny
- [gmx-users] Undocumented mdp options David van der Spoel
[gmx-users] QM/MM API William M. Ames
- [gmx-users] QM/MM API Lars.Schaefer at mpi-bpc.mpg.de
[gmx-users] problem with free energy calculations Michael Brunsteiner
- [gmx-users] problem with free energy calculations David Mobley
[gmx-users] Re:Building Topology of a Drug (using the ff of your choice) Hu Zhongqiao
- [gmx-users] Re:Building Topology of a Drug (using the ff of your choice) Yang Ye
[gmx-users] Queston about energy Elias santos
- [gmx-users] Queston about energy Mark Abraham
[gmx-users] [Fwd: TFE 33%] Mark Abraham
- [gmx-users] [Fwd: TFE 33%] Mark Abraham
  - [gmx-users] [Fwd: TFE 33%] chiradip chatterjee
[gmx-users] opls kcal->kj conversion Tim Sirk
- [gmx-users] opls kcal->kj conversion Mark Abraham
[gmx-users] How to set the dielectric constant nur avneet
- [gmx-users] How to set the dielectric constant Mark Abraham
[gmx-users] How to do simmulated annealing nur avneet
- [gmx-users] How to do simmulated annealing Dallas B. Warren
[gmx-users] How to do simmulated annealing nur avneet
[gmx-users] How to generate plot of tertiary contact over time sangeeta kundu
- [gmx-users] How to generate plot of tertiary contact over time Mark Abraham
  - [gmx-users] How to generate plot of tertiary contact over time sangeeta kundu
[gmx-users] Add ions Error! Qiang Zhong
[gmx-users] Parameter file for AFM pulling nur avneet
- [gmx-users] Parameter file for AFM pulling Mark Abraham
[gmx-users] Re: Impact velocity Janne Hirvi
- [gmx-users] Re: Impact velocity David van der Spoel
[gmx-users] Leaving users list Fernando Mattio
- [gmx-users] Leaving users list Mark Abraham
[gmx-users] parameters for nitric oxide (NO) Jochen Hub
- [gmx-users] parameters for nitric oxide (NO) Anthony Cruz
[gmx-users] query about g_rdf and make_ndx sangeeta kundu
- [gmx-users] query about g_rdf and make_ndx Dallas B. Warren
  - [gmx-users] query about g_rdf and make_ndx sangeeta kundu
[gmx-users] Principle component analysis cosine content sridhar at cdfd.org.in
[gmx-users] RE: query about g_rdf and make_ndx Mauricio Sica
[gmx-users] Simulation in parts toma0052
- [gmx-users] Simulation in parts Dallas B. Warren
- [gmx-users] Simulation in parts Carl Caleman
- [gmx-users] Simulation in parts Mark Abraham
[gmx-users] Nitty Gritty details of compiling to use both cores of an X86 core-duo Trevor Marshall
- [gmx-users] Nitty Gritty details of compiling to use both cores of an X86 core-duo Mark Abraham
  - [gmx-users] Nitty Gritty details of compiling to use both cores of an X86 core-duo Trevor Marshall
    - [gmx-users] Nitty Gritty details of compiling to use both cores of an X86 core-duo Mark Abraham
    - [gmx-users] Nitty Gritty details of compiling to use both cores of an X86 core-duo Tsjerk Wassenaar
[gmx-users] 3xRe: Impact velocity Janne Hirvi
- [gmx-users] 3xRe: Impact velocity David van der Spoel
[gmx-users] query about .xpm file sangeeta kundu
- [gmx-users] query about .xpm file David van der Spoel
  - [gmx-users] query about .xpm file Berk Hess
    - [gmx-users] query about .xpm file sangeeta kundu
    - [gmx-users] query about .xpm file sangeeta kundu
  - [gmx-users] query about .xpm file sangeeta kundu
  - [gmx-users] query about .xpm file sangeeta kundu
  - [gmx-users] query about .xpm file sangeeta kundu
    - [gmx-users] query about .xpm file Mark Abraham
[gmx-users] 4xRe: Impact velocity Janne Hirvi
- [gmx-users] 4xRe: Impact velocity Robert Johnson
[gmx-users] Re: Gromacs Anton Feenstra (Thuis)
[gmx-users] 5xRe: Impact velocity Janne Hirvi
[gmx-users] simulation confined to a small region Filip Jagodzinski
- [gmx-users] simulation confined to a small region Mark Abraham
  - [gmx-users] simulation confined to a small region Tsjerk Wassenaar
[gmx-users] simulation confied to a small region Filip Jagodzinski
[gmx-users] 'hq' flag of g_rdf sunita at chem.iitb.ac.in
- [gmx-users] 'hq' flag of g_rdf Tsjerk Wassenaar
[gmx-users] Advices needed! Triguero, Luciano O
- [gmx-users] Advices needed! David van der Spoel
  - [gmx-users] Advices needed! Triguero, Luciano O
    - [gmx-users] Advices needed! Mark Abraham
[gmx-users] mixed lipid bilayer analysis syma
[gmx-users] help on g_hbond -contact Caterina Arcangeli
- [gmx-users] help on g_hbond -contact Tsjerk Wassenaar
  - [gmx-users] help on g_hbond -contact Erik Marklund
    - [gmx-users] help on g_hbond -contact Caterina Arcangeli
[gmx-users] continuation of simulation Michal Walczak
- [gmx-users] continuation of simulation chiradip chatterjee
- [gmx-users] continuation of simulation Mark Abraham
[gmx-users] g_traj with xtc_grps ... all coordinates zero Michael Brunsteiner
- [gmx-users] g_traj with xtc_grps ... all coordinates zero Mark Abraham
- [gmx-users] g_traj with xtc_grps ... all coordinates zero ravi kant
  - [gmx-users] g_traj with xtc_grps ... all coordinates zero Mark Abraham
[gmx-users] time estimation script Martin Höfling
- [gmx-users] time estimation script David van der Spoel
  - [gmx-users] time estimation script Martin Höfling
    - [gmx-users] time estimation script David van der Spoel
    - [gmx-users] time estimation script Martin Höfling
    - [gmx-users] time estimation script Stéphane Téletchéa
    - [gmx-users] time estimation script Mark Abraham
    - [gmx-users] time estimation script Stéphane Téletchéa
    - [gmx-users] time estimation script Martin Höfling
    - [gmx-users] problems with nsgrid Gianfranco Bocchinfuso
[gmx-users] segmentation fault priya priya
- [gmx-users] segmentation fault Tsjerk Wassenaar
[gmx-users] finding diffusivity at desired region in a simulation box ravi kant
- [gmx-users] finding diffusivity at desired region in a simulation box Dallas B. Warren
  - [gmx-users] How to keep intact hdrogen coordinates from a PDB file Nicolas SAPAY
    - [gmx-users] How to keep intact hdrogen coordinates from a PDB file Mark Abraham
    - [gmx-users] How to keep intact hdrogen coordinates from a PDB file Nicolas SAPAY
  - [gmx-users] finding diffusivity at desired region in a simulation box ravi kant
[gmx-users] Question about g_cluster groups Marco Pasi
[gmx-users] restarting a sorted shuffled trajectory chris.neale at utoronto.ca
- [gmx-users] Advices needed! Triguero, Luciano O
  - [gmx-users] Advices needed! Mark Abraham
[gmx-users] orthorhobmic box?? priyanka srivastava
- [gmx-users] orthorhobmic box?? Tsjerk Wassenaar
  - [gmx-users] orthorhobmic box?? priyanka srivastava
  - [gmx-users] orthorhobmic box?? priyanka srivastava
[gmx-users] how to extract frames Tanos França
- [gmx-users] how to extract frames Diego Enry
[gmx-users] Chimera GROMACS support Eric Pettersen
[gmx-users] genion error! Qiang Zhong
- [gmx-users] genion error! Erik Marklund
- [gmx-users] genion error! Mark Abraham
  - [gmx-users] genion error! Yang Ye
- [gmx-users] genion error! Triguero, Luciano O
[gmx-users] system and box collapsed Qiang Zhong
- [gmx-users] system and box collapsed Mark Abraham
[gmx-users] problem with trjconv OZGE ENGIN
- [gmx-users] problem with trjconv Mark Abraham
  - [gmx-users] problem with trjconv Tsjerk Wassenaar
[gmx-users] problem with trjconv OZGE ENGIN

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