[gmx-users] fixing protein during energy minimization
Mark.Abraham at anu.edu.au
Tue Feb 6 01:02:30 CET 2007
Vaibhav Saraf wrote:
> Hi all,
> Can we fix the protein along with its water of crystallization, while
> doing energy minimization with some additional water molecules? if
> yes, how?
Yes, they're called "position restraints". If you're serious about doing
MD in GROMACS, please read about the first five chapters of the manual
first. It's quite good, and reading it will help you avoid making silly
mistakes, and avoid you not being aware of clearly-stated functionality.
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