[gmx-users] script for renumbering atoms/bonds/angles etc

Tsjerk Wassenaar tsjerkw at gmail.com
Tue Feb 6 08:48:17 CET 2007

Hi Anirban,

Otherwise, there's a script by Anton Feenstra on the contributions
page of the Gromacs site (renumtop).



On 2/6/07, Mark Abraham <Mark.Abraham at anu.edu.au> wrote:
> Anirban Mudi wrote:
> > hello
> >
> > does anyone has a script to renumber atoms/bonds/angles/dihedrals
> > after insertion of a dummy atom in a topology file ?
> Why not just add it last? Only numbering within a molecule is relevant
> for the topology for that molecule.
> Mark
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Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
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