[gmx-users] Gromacs 96 and POPE

Steffen Wolf swolf at bph.rub.de
Tue Feb 6 09:57:52 CET 2007

Hu Ugur,
actually you don't have to care to run the lipid pdb by Tieleman through
pdb2gmx at all - just copy the respective lines out of lipid.itp into
ffG43a1bon.itp and ffG43a1nb.itp (or the force field you want to use)
and put "#include pope.itp" into your *.top file - et voila, you're
done. Attention: the lipid parameters are optimized to be used with SPC
water! So pay attention when using TIP3...
> Hi all;
> I am new to Gromacs, trying to create a membrane with POPE lipids. I
> got the pope.itp and lipid.itp (for Gromos87)  files from Tieleman
> group web site, and trying to make POPE recognized by pdb2gmx. So far
> I could not get it done..
> - Can it be because lipid.itp is not for Gromos96? does anyone have
> lipid.itp for Gromos96?
> - Which force field would be a better choice for TIP3 and POPE
> application?
> I'd appreciate any help..
> cheers
> _________________________________________________________________
> Valentine’s Day -- Shop for gifts that spell L-O-V-E at MSN Shopping
> http://shopping.msn.com/content/shp/?ctId=8323,ptnrid=37,ptnrdata=24095&tcode=wlmtagline
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please don't post (un)subscribe requests to the list. Use the www
> interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php

Dipl.-Chem. Steffen Wolf
Department of Biophysics
University of Bochum
ND 04/67
44780 Bochum
Tel: +49 (0)234 32 28363
Fax: +49 (0)234 32 14626
E-Mail: swolf at bph.rub.de
Web: http://www.bph.rub.de 

More information about the gromacs.org_gmx-users mailing list