[gmx-users] gromacs-3.3 build on linux. make fails

[Mark Abraham]

susan james wrote:
> Hello,
> 
> I'm new to this list and hope I can get some help.

Thanks for the good help request - lots of pertinent information can 
only improve your chances of getting help!

> 
> the gromacs make fails.   the complete log is too large to send.
> and, more precisely, here's where make bailed out.
> ===================================
> mx_mpi_d.so -lnsl /usr/local/fftw301-double/lib/libfftw3.a -lm -lSM 
> -lICE -lX11 -Wl,--rpath -Wl,/usr/local/gromacs-double/3.3/lib
> ../gmxlib/.libs/libgmx_mpi_d.so: undefined reference to 
> `_nb_kerne010_x86_64_sse2'
> collect2: ld returned 1 exit status
> mpicc: No such file or directory
> make[3]: *** [grompp] Error 1
> make[3]: Leaving directory 
> `/root/src/gromacs/gromacs-3.3-double/gromacs-3.3/src/kernel'
> make[2]: *** [all-recursive] Error 1
> make[2]: Leaving directory 
> `/root/src/gromacs/gromacs-3.3-double/gromacs-3.3/src'
> make[1]: *** [all] Error 2
> make[1]: Leaving directory 
> `/root/src/gromacs/gromacs-3.3-double/gromacs-3.3/src'
> make: *** [all-recursive] Error 1
> =================================

Unfortunately about another twenty lines of this will probably be 
instructive - you've actually cut off part of the command that failed.

Mark