[gmx-users] query about g_rdf and make_ndx

[Dallas B. Warren]

The group system represents every single atom that is within the file
sent to make_ndx.  Underneath that will be a number of other groups,
based on the molecules within the system, such as Protein, SOL, Na etc.
To select a particular residue, you have to use the selection commands
that are part of script.  All of them are listed above the command line
within the script, and there is a help option (h) that will explain how
it all works.

Catch ya,

Dr. Dallas Warren
Lecturer
Department of Pharmaceutical Biology and Pharmacology
Victorian College of Pharmacy, Monash University
381 Royal Parade, Parkville VIC 3010
dallas.warren at vcp.monash.edu.au
+61 3 9903 9524
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When the only tool you own is a hammer, every problem begins to resemble
a nail.