[gmx-users] query about .xpm file

sangeeta kundu sangeeta0983 at yahoo.co.in
Thu Feb 22 11:51:45 CET 2007

Dear Sir,
   When I am trying with -skip in do_dssp according to
your suggestion it is giving an error messege "Invalid
command line argument:
" , It is not even mentioned in the manual, and When I
am trying with -bx or -by whathever value I give the
graph little changes, sometimes it becomes unreadable
too.How can I solve it?

--- Berk Hess <gmx3 at hotmail.com> wrote:

> >From: David van der Spoel <spoel at xray.bmc.uu.se>
> >Reply-To: Discussion list for GROMACS users
> <gmx-users at gromacs.org>
> >To: Discussion list for GROMACS users
> <gmx-users at gromacs.org>
> >Subject: Re: [gmx-users] query about .xpm file
> >Date: Thu, 22 Feb 2007 11:28:16 +0100
> >
> >sangeeta kundu wrote:
> >>Dear Sir,
> >>
> >>     I converted  the output of do_dssp program
> (.xpm
> >>file) into an .eps file by the command xpm2ps,I
> also
> >>specified the size by -size command, but the
> problem
> >>is that when I am observing the trajectory for
> >>10-200ps the output looks fine , but as I increase
> the
> >>time scale from 100ps to 1/2 - 8/10 ns  I am
> observing
> >>only a line, I mean to say as I increase the X
> axis,
> >>the Y axis is being quenched, so it is not anyway
> >>producing the correct data type,I can not
> understand
> >>how to get rid of this problem , How can I
> visualise
> >>the .xpm file, How can I convert it successfully
> into
> >>a postscript file, so that every residue and the
> time
> >>scale will be clearly visible, PLease help.
> >>
> >specify an m2p input file where you set the y-size
> larger. alternatively 
> >use -skip in do_dssp to get fewer point on the x
> axis.
> I think specifying different -bx and -by values with
> xpm2ps
> will solve your problem.
> Berk.
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