[gmx-users] system and box collapsed

[Mark Abraham]

Qiang Zhong wrote:
> Dear users:
>      I have a protein complex,which is docking result that from cluspr server,The
> complex maybe not perfect,So when I simulate it on gromacs ,many linus warning was
> reported.
>      Could somebody tell me how to handle this problem,how to pre-optimize the
> complex,Thank you very much!

Have you tried following the methodologies in the tutorials?

Mark