[gmx-users] protein goes out from the waterbox during MD

Eugenia Polverini eugenia.polverini at fis.unipr.it
Tue Jan 30 12:48:48 CET 2007

Dear all,
in the output of my 5 ns MD of a small protein in a box of water and 
pbc, I see that during MD the protein goes out from the box.
Why it happened? Is it a problem or I can accept that all was OK?
I have set the comm_mode=angular.

Thanks for your help!
Best regards

Eugenia Polverini, Ph.D.
Dept. of Physics
University of Parma
Parco Area delle Scienze, 7/A
43100 Parma

Phone: +39 0521 905254
Fax: +39 0521 905223
E-Mail: eugenia.polverini at fis.unipr.it

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