[gmx-users] Error_message

[David van der Spoel]

pkmukher wrote:
> Hi,
> 
>  I am trying to generate a .tpr file.I am getting the
> following error message (below). 
> 
> Fatal error:
> There were 4 error(s) processing your input
> 
> I could not understand what the error(s) were since nothing
> else was given.Is there some place where the details of the
> error will be listed so that i can rectify them.Thanks  
> 
> Back Off! I just backed up mdout.mdp to ./#mdout.mdp.2#
> checking input for internal consistency...
> calling /usr/bin/cpp...
> processing topology...
> Generated 1284 of the 1485 non-bonded parameter combinations
> Excluding 3 bonded neighbours for Protein 1
> Excluding 3 bonded neighbours for IN4 1
> Excluding 2 bonded neighbours for SOL 4778
> NOTE:
>   System has non-zero total charge: 9.000002e+00
> 
> processing coordinates...
> double-checking input for internal consistency...
> -------------------------------------------------------
> Program grompp, VERSION 3.3.1
> Source code file: grompp.c, line: 1109
> 
> Fatal error:
> There were 4 error(s) processing your input
> -------------------------------------------------------
> 
> "Encountered Subspace Anomaly" (Star Trek)
> 
Read the COMPLETE output from grompp and if you still don't understand 
the error send the COMPLETE output to the list.

-- 
David van der Spoel, Ph.D.
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se