[gmx-users] Re: gmx-users Digest, Vol 39, Issue 37
David van der Spoel
spoel at xray.bmc.uu.se
Tue Jul 10 10:14:34 CEST 2007
taveechai taveecharoenkool wrote:
> Yes, I use GCC program. Dssp can do well, but do_dssp
but which version? 4.1.x is broken.
> --- David van der Spoel <spoel at xray.bmc.uu.se> wrote:
>> taveechai taveecharoenkool wrote:
>>> Dear Mark and Gromacs users,
>>> Thanks but for do_dssp i also used xxx.pdb file
>>> do_dssp program should be ended for a few minutes
>>> it doesn't. It seems like it won't end.
>>> And because i 'm afraid i cannot use do_dssp in
>>> Gromacs, i tried to convert dssp file to xpm or
>>> format that i can see as picture or table.
>>> 1.is there any program to convert dssp file to
>>> 2. do_dssp in Gromacs, if the program seem to
>>> end..... even i think i declare variable as
>>> suggestion in manual correctly.... how to do to
>>> picture dssp file?
>>> thanks a lot
>> how did you compile the program? could be another
>> gcc 4.1 problem.
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>> David van der Spoel, Ph.D.
>> Molec. Biophys. group, Dept. of Cell & Molec. Biol.,
>> Uppsala University.
>> Box 596, 75124 Uppsala, Sweden. Phone: +46184714205.
>> Fax: +4618511755.
>> spoel at xray.bmc.uu.se spoel at gromacs.org
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David van der Spoel, Ph.D.
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone: +46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se spoel at gromacs.org http://folding.bmc.uu.se
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