[gmx-users] Re: gmx-users Digest, Vol 39, Issue 37

[David van der Spoel]

taveechai taveecharoenkool wrote:
> Yes, I use GCC program. Dssp can do well, but do_dssp
> doesn't.


but which version? 4.1.x is broken.

> --- David van der Spoel <spoel at xray.bmc.uu.se> wrote:
> 
>> taveechai taveecharoenkool wrote:
>>> Dear Mark and Gromacs users,
>>>  Thanks but for do_dssp i also used xxx.pdb file
>> which
>>> do_dssp program should be ended for a few minutes
>> but
>>> it doesn't. It seems like it won't end.
>>>  And because i 'm afraid i cannot use do_dssp in
>>> Gromacs, i tried to convert dssp file to xpm or
>> any
>>> format that i can see as picture or table. 
>>> 1.is there any program to convert dssp file to
>> picture
>>> format.
>>> 2. do_dssp in Gromacs, if the program seem to
>> never
>>> end..... even i think i  declare variable as
>>> suggestion in manual correctly.... how to do to
>> get
>>> picture dssp file?
>>> thanks a lot  
>> how did you compile the program? could be another
>> gcc 4.1 problem.
>>
>>>
>>>
>>>        
>>>
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>> -- 
>> David van der Spoel, Ph.D.
>> Molec. Biophys. group, Dept. of Cell & Molec. Biol.,
>> Uppsala University.
>> Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205.
>> Fax: +4618511755.
>> spoel at xray.bmc.uu.se	spoel at gromacs.org  
>> http://folding.bmc.uu.se
>>
> 
> 
> 
>        
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-- 
David van der Spoel, Ph.D.
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se