[gmx-users] Re: gmx-users Digest, Vol 39, Issue 37

Mark Abraham Mark.Abraham at anu.edu.au
Tue Jul 10 09:18:03 CEST 2007

taveechai taveecharoenkool wrote:
> Dear Mark and Gromacs users,
>  Thanks but for do_dssp i also used xxx.pdb file which
> do_dssp program should be ended for a few minutes but
> it doesn't. It seems like it won't end.
>  And because i 'm afraid i cannot use do_dssp in
> Gromacs, i tried to convert dssp file to xpm or any
> format that i can see as picture or table. 
> 1.is there any program to convert dssp file to picture
> format.
> 2. do_dssp in Gromacs, if the program seem to never
> end..... even i think i  declare variable as
> suggestion in manual correctly.... how to do to get
> picture dssp file?

You've probably not set things up correctly, but we can't tell unless 
you tell us about your machine. You should use Google for finding out 
how to convert or view file formats.


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