[gmx-users] Regarding mdrun segmentation fault in cluster

[David van der Spoel]

steletch at jouy.inra.fr wrote:
> Selon naga raju <nagaraju_cy at yahoo.co.in>:
> 
>> Dear gmx users,
>>                 I am using mdrun command in pentium-4
>> redhat linux, job was completed without any errors.
>> When I use the same files in cluster(redhat
>> enterprizes OS), I got the following error,
> 
> ...
> 
>>  gen_seed      =    17532
>>  constraints   =    all-bonds
> 
> Try using h-bonds, i suspect this will not be a problem anymore :-)
> 
> If that solves, the problem, that may provide another view from the report i
> made last week ...
> 
quite on the contrary... (see bugzilla 109). Anyway, it is not a good 
idea to adapt the simulation if there is positive evidence that it 
should run.
-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++