June 2007 Archives by date

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Starting: Fri Jun 1 02:37:25 CEST 2007
Ending: Sat Jun 30 20:55:03 CEST 2007
Messages: 511

[gmx-users] about CNT simulation Mark Abraham
[gmx-users] web page error on "Downloads Home » Contributed software" chris.neale at utoronto.ca
Re: [gmx-users] web page error on "Downloads Home » Contributed software" David van der Spoel
[gmx-users] Regarding membrane protein solvation naga raju
[gmx-users] protein-DNA simulation with Amber port Alaguraj Veluchamy
[gmx-users] Regarding membrane protein solvation Alan Dodd
[gmx-users] OT: script to mutate residues Martin Höfling
[gmx-users] protein-DNA simulation with Amber port TJ Piggot
[gmx-users] OT: script to mutate residues Erik Marklund
[gmx-users] protein-DNA simulation with Amber port Erik Marklund
[gmx-users] OT: script to mutate residues Martin Höfling
[gmx-users] protein-DNA simulation with Amber port TJ Piggot
[gmx-users] protein-DNA simulation with Amber port Mark Abraham
[gmx-users] protein-DNA simulation with Amber port TJ Piggot
[gmx-users] combination rules priyanka srivastava
[gmx-users] combination rules Mark Abraham
[Fwd: Re: [gmx-users] QMMM free energy] David Mobley
[gmx-users] web page error on "Downloads Home » Contributed software" chris.neale at utoronto.ca
[gmx-users] Walls & table-based potentials Brett Olsen
[gmx-users] simulation abhishek sharma
[gmx-users] simulation Mark Abraham
[gmx-users] RE: Regarding membrane protein solvation naga raju
[gmx-users] simulating copper nano particles abhishek sharma
[gmx-users] simulating copper nano particles Mark Abraham
[gmx-users] Coordinates in hdel.top and hdel.gro not matching Alaguraj Veluchamy
[gmx-users] simulating copper nano particles David van der Spoel
[gmx-users] Coordinates in hdel.top and hdel.gro not matching David van der Spoel
[gmx-users] combination rules priyanka srivastava
[gmx-users] combination rules David van der Spoel
[gmx-users] Coordinates in hdel.top and hdel.gro not matching Erik Marklund
[gmx-users] protein-DNA simulation with Amber port Yang Ye
[gmx-users] GROMACS not scaling well with Core4 Quad technology CPUs Trevor Marshall
[gmx-users] genbox problem with micelle Alif M Latif
[gmx-users] genbox problem with micelle Mark Abraham
[gmx-users] genbox problem with micelle Martin Höfling
[gmx-users] genbox problem with micelle David van der Spoel
[gmx-users] Walls & table-based potentials Berk Hess
[gmx-users] problem with the output file of g_density OZGE ENGIN
[gmx-users] g_rms recognition of xtc files Beevers, Andrew
[gmx-users] popc.itp mahbubeh zarrabi
[gmx-users] problem with the output file of g_density Mark Abraham
[gmx-users] popc.itp Mark Abraham
[gmx-users] g_rms recognition of xtc files Mark Abraham
[gmx-users] adding a new atom type (Fe2+) Shahrokh Safarian
[gmx-users] Re: genbox problem with micelle chris.neale at utoronto.ca
[gmx-users] Question about CNT simulation bo yang
[gmx-users] Question about CNT simulation Robert Johnson
[gmx-users] Question about CNT simulation Mark Abraham
[gmx-users] Re: genbox problem with micelle Alif M Latif
[gmx-users] adding a new atom type (Fe2+) Mark Abraham
[gmx-users] Re: genbox problem with micelle Mark Abraham
[gmx-users] colour abhishek sharma
[gmx-users] colour David van der Spoel
[gmx-users] colour Mark Abraham
[gmx-users] tpbconv restart crashing on 3.3.1 Alan Dodd
[gmx-users] constrain atoms at the moving sites Xinghua Shi
[gmx-users] constrain atoms at the moving sites Mark Abraham
[gmx-users] tpbconv restart crashing on 3.3.1 Lars Schaefer
[gmx-users] tpbconv restart crashing on 3.3.1 Mark Abraham
[gmx-users] using old energies lorix
[gmx-users] Parameter QMcharge does not work with Gromacs-CPMD Pradip K Biswas
[gmx-users] Question about ffamber in Gromacs bo yang
[gmx-users] Question about ffamber in Gromacs Mark Abraham
[gmx-users] editconf (protein+bilayer) mahbubeh zarrabi
[gmx-users] editconf (protein+bilayer) David van der Spoel
[gmx-users] Problem in genion C.RAMYA
[gmx-users] Problem in genion David van der Spoel
[gmx-users] Problem in genion Diego Enry
[gmx-users] Problem in genion C.RAMYA
[gmx-users] Problem in genion David van der Spoel
[gmx-users] Problem in genion Mark Abraham
[gmx-users] request for help to prepare a 111 gold surface jagannath mondal
[gmx-users] g_msd and make_ndx toma0052
[gmx-users] pdb files Sagittarius
[gmx-users] pdb files Mark Abraham
[gmx-users] g_hbond (method) Anil Kumar
[gmx-users] pdb files Sagittarius
[gmx-users] pdb files Mark Abraham
[gmx-users] pdb files Dallas B. Warren
[gmx-users] g_hbond (method) David van der Spoel
[gmx-users] pdb files David van der Spoel
[gmx-users] g_msd and make_ndx David van der Spoel
[gmx-users] using old energies David van der Spoel
[gmx-users] Problem using mdrun C.RAMYA
[gmx-users] Problem using mdrun Mark Abraham
[gmx-users] re: g_msd and make_ndx chris.neale at utoronto.ca
[gmx-users] Individual energies of amino acids abhigna polavarapu
[gmx-users] How to Run Gromacs bptilaka at mail.uh.edu
[gmx-users] How to Run Gromacs Mark Abraham
[gmx-users] Individual energies of amino acids Mark Abraham
[gmx-users] Coordinate file does not match topology Sheyore Omovie
[gmx-users] How to Run Gromacs bptilaka at mail.uh.edu
[gmx-users] Coordinate file does not match topology Mark Abraham
[gmx-users] Re: gmx-users Digest, Vol 38, Issue 14 M.N. Manoj
[gmx-users] How to Run Gromacs David van der Spoel
[gmx-users] How to Run Gromacs bptilaka at mail.uh.edu
[gmx-users] How to Run Gromacs David van der Spoel
[gmx-users] Coordinate file does not match topology Alan Dodd
[gmx-users] AIX 5.3 compilation error Marius Retegan
[gmx-users] adding counter ions OZGE ENGIN
[gmx-users] adding counter ions Erik Marklund
[gmx-users] Fwd: Individual energies of amino acids abhigna polavarapu
[gmx-users] Fwd: Individual energies of amino acids David van der Spoel
[gmx-users] AIX 5.3 compilation error David van der Spoel
[gmx-users] template.c Pedro Alexandre de Araújo Gomes Lapido Loureiro
[gmx-users] template.c David van der Spoel
[gmx-users] g_chi -all Anthony Linares
[gmx-users] template.c Pedro Alexandre de Araújo Gomes Lapido Loureiro
[gmx-users] template.c David van der Spoel
[gmx-users] protein in hole mahbubeh zarrabi
[gmx-users] protein in hole David van der Spoel
[gmx-users] protein in hole mahbubeh zarrabi
[gmx-users] Regarding mdrun segmentation fault in cluster naga raju
[gmx-users] protein in hole David van der Spoel
[gmx-users] Regarding mdrun segmentation fault in cluster David van der Spoel
[gmx-users] Regarding mdrun segmentation fault in cluster steletch at jouy.inra.fr
[gmx-users] Regarding mdrun segmentation fault in cluster David van der Spoel
[gmx-users] Stuck --> unstuck ... David van der Spoel
[gmx-users] genion Elias santos
[gmx-users] Coordinate file does not match topology Sheyore Omovie
[gmx-users] Coordinate file does not match topology Justin Lemkul
[gmx-users] position by editconf mahbubeh zarrabi
[gmx-users] position by editconf David van der Spoel
[gmx-users] generating a top file Shahrokh Safarian
[gmx-users] Coordinate file does not match topology Yang Ye
[gmx-users] generating a top file Yang Ye
[gmx-users] Coordinate file does not match topology Sheyore Omovie
[gmx-users] Re: generating a top file Yang Ye
[gmx-users] Coordinate file does not match topology Yang Ye
[gmx-users] tpbconv restart crashing on 3.3.1 David van der Spoel
[gmx-users] Coordinate file does not match topology Sheyore Omovie
[gmx-users] Coordinate file does not match topology David van der Spoel
[gmx-users] genion Dallas B. Warren
[gmx-users] Coordinate file does not match topology Yang Ye
[gmx-users] tpbconv restart crashing on 3.3.1 Alan Dodd
[gmx-users] Re:Regarding mdrun sigmentation fault in cluster naga raju
[gmx-users] g_mindist -pi option andrea spitaleri
[gmx-users] flexible molecular alignment Siavoush Dastmalchi
[gmx-users] genion Elias santos
[gmx-users] genion David van der Spoel
[gmx-users] trjconv -drop drop.xvg ?? pascal.baillod at epfl.ch
[gmx-users] genion - why shall we neutralize the charges? Yang Ye
[gmx-users] trjconv -drop drop.xvg ?? Yang Ye
[gmx-users] dPCA "atoms" Russell Green
[gmx-users] dPCA "atoms" Yang Ye
[gmx-users] dPCA "atoms" David van der Spoel
[gmx-users] dPCA "atoms" Russell Green
[gmx-users] OT: script to mutate residues chenmengen
[gmx-users] flexible molecular alignment chenmengen
[gmx-users] adding counter ions Mark Abraham
[gmx-users] Fwd: Individual energies of amino acids Mark Abraham
[gmx-users] generating a top file Mark Abraham
[gmx-users] Re: generating a top file Mark Abraham
[gmx-users] g_mindist -pi option andrea spitaleri
[gmx-users] sigmentation fault while creating index file naga raju
[gmx-users] sigmentation fault while creating index file David van der Spoel
[gmx-users] Re(2): trjconv -drop drop.xvg ?? pascal.baillod at epfl.ch
[gmx-users] g_mindist -pi option Mark Abraham
[gmx-users] Re(2): trjconv -drop drop.xvg ?? David van der Spoel
[gmx-users] Re(2): trjconv -drop drop.xvg ?? Yang Ye
[gmx-users] adding counter ions OZGE ENGIN
[gmx-users] adding counter ions Mark Abraham
[gmx-users] Re: sigmentation fault while creating index file naga raju
[gmx-users] Re(2): trjconv -drop drop.xvg ?? Yang Ye
[gmx-users] g_mindist -pi option Miguel Machuqueiro
[gmx-users] g_mindist -pi option Yang Ye
[gmx-users] g_mindist -pi option andrea spitaleri
[gmx-users] g_mindist -pi option andrea spitaleri
[gmx-users] g_mindist -pi option Tsjerk Wassenaar
[gmx-users] Born energies of ions Georgios Patargias
[gmx-users] Re(3): trjconv -drop drop.xvg THANKS! pascal.baillod at epfl.ch
[gmx-users] Coordinate file does not match topology Sheyore Omovie
[gmx-users] simulation popc Jordi Camps
[gmx-users] Gromacs tools mistakenly change the name of atoms in coordinate files Robert Johnson
[gmx-users] Gromacs tools mistakenly change the name of atoms in coordinate files David van der Spoel
[gmx-users] Gromacs tools mistakenly change the name of atoms incoordinate files chenmengen
[gmx-users] Continuing runs that stopped michelle yap
[gmx-users] Continuing runs that stopped Dallas B. Warren
[gmx-users] Continuing runs that stopped Arun kumar
[gmx-users] multi problem Andrei Neamtu
[gmx-users] question about PBC and link cell based cutoff method linfu
[gmx-users] multi problem Mark Abraham
[gmx-users] question about PBC and link cell based cutoff method Mark Abraham
[gmx-users] make-hole mahbubeh zarrabi
[gmx-users] re:multi problem again Andrei Neamtu
[gmx-users] re:multi problem again David van der Spoel
[gmx-users] re:multi problem again Yang Ye
[gmx-users] Gromacs tools mistakenly change the name of atoms in coordinate files TJ Piggot
[gmx-users] re:multi problem Andrei Neamtu
[gmx-users] Re: gmx-users Digest, Vol 38, Issue 29 linfu
[gmx-users] re:multi problem again Mark Abraham
[gmx-users] Gromacs tools mistakenly change the name of atoms in coordinate files Robert Johnson
[gmx-users] Gromacs tools mistakenly change the name of atoms in coordinate files David van der Spoel
[gmx-users] Gromacs tools mistakenly change the name of atoms in coordinate files Erik Lindahl
[gmx-users] make-hole Chris Neale
[gmx-users] Gromacs tools mistakenly change the name of atoms in coordinate files Yang Ye
[gmx-users] Gromacs tools mistakenly change the name of atoms in coordinate files Robert Johnson
[gmx-users] a question about output virial Lu Lanyuan
[gmx-users] HB lifetime in g_hbond Patricia Soto Becerra
[gmx-users] problem with the max number of atom in charge group Nicolas Sapay
[gmx-users] Warning when using both LJ and Buckingham non-bonded interaction WU Yanbin
[gmx-users] problem with the max number of atom in charge group Mark Abraham
[gmx-users] Warning when using both LJ and Buckingham non-bonded interaction Mark Abraham
[gmx-users] Re: Warning when using both LJ and Buckingham non-bonded interaction WU Yanbin
[gmx-users] Regarding scalling factor of cluster and installation in cluster naga raju
[gmx-users] Regarding scalling factor of cluster and installation in cluster Mark Abraham
[gmx-users] HB lifetime in g_hbond David van der Spoel
[gmx-users] Re: Warning when using both LJ and Buckingham non-bonded interaction David van der Spoel
[gmx-users] problem with the max number of atom in charge group David van der Spoel
[gmx-users] simulation popc Tsjerk Wassenaar
[gmx-users] Stuck --> unstuck ... Stéphane Téletchéa
[gmx-users] Stuck --> unstuck ... David van der Spoel
[gmx-users] gromacs on IBM Power 5 Linux Machine: Preprocessor problem Monika Sharma
[gmx-users] gromacs on IBM Power 5 Linux Machine: Preprocessor problem Mark Abraham
[gmx-users] gromacs on IBM Power 5 Linux Machine: Preprocessor problem Monika Sharma
[gmx-users] RNA ffgmx.hdb problems dwunnick at uni-osnabrueck.de
[gmx-users] gromacs on IBM Power 5 Linux Machine: Preprocessor problem David van der Spoel
[gmx-users] RNA ffgmx.hdb problems Florian Haberl
[gmx-users] RNA ffgmx.hdb problems Stéphane Téletchéa
[gmx-users] Energy difference - Gromacs, Autodock Александр Журавлев
[gmx-users] gromacs on IBM Power 5 Linux Machine: Preprocessor problem Mark Abraham
[gmx-users] mdrun -glas Michal Kolinski
[gmx-users] mdrun -glas David van der Spoel
[gmx-users] g_dipoles output Martin Höfling
[gmx-users] Re: OPLSaa+Lipid.itp question Chris Neale
[gmx-users] Re: HB lifetime in g_hbond Patricia Soto Becerra
[gmx-users] Re: Warning when using both LJ and Buckingham non-bonded interaction WU Yanbin
[gmx-users] Re: Warning when using both LJ and Buckingham non-bonded interaction WU Yanbin
[gmx-users] Energy difference - Gromacs, Autodock David van der Spoel
[gmx-users] Re: Warning when using both LJ and Buckingham non-bonded interaction David van der Spoel
[gmx-users] g_dipoles output David van der Spoel
[gmx-users] Urea molecule deformed in urea-water simulations using ffamber99 George Abadir
[gmx-users] Urea molecule deformed in urea-water simulations using ffamber99 David van der Spoel
[gmx-users] Urea molecule deformed in urea-water simulations using ffamber99 Mark Abraham
[gmx-users] Anisotropic Pressure Matteo Guglielmi
[gmx-users] Anisotropic Pressure David van der Spoel
[gmx-users] Angle parameters in Amber port and in Gromacs George Abadir
[gmx-users] query regarding self-assembly process jagannath mondal
[gmx-users] query regarding self-assembly process Mark Abraham
[gmx-users] Angle parameters in Amber port and in Gromacs Mark Abraham
[gmx-users] Anisotropic Pressure Berk Hess
[gmx-users] volume calculation abhishek sharma
[gmx-users] volume calculation Mark Abraham
[gmx-users] Angle parameters in Amber port and in Gromacs Erik Lindahl
[gmx-users] non-intergral charge for L-alanine molecules? Hu Zhongqiao
[gmx-users] Anisotropic Pressure Matteo Guglielmi
[gmx-users] non-intergral charge for L-alanine molecules? Mark Abraham
[gmx-users] non-intergral charge for L-alanine molecules? David van der Spoel
[gmx-users] Question about DNA simulation Maik Goette
[gmx-users] RE: non-intergral charge for L-alanine molecules? Hu Zhongqiao
[gmx-users] FW: non-intergral charge for L-alanine molecules? Hu Zhongqiao
[gmx-users] RE: non-intergral charge for L-alanine molecules? David van der Spoel
[gmx-users] Anisotropic Pressure Pedro Alexandre de Araújo Gomes Lapido Loureiro
[gmx-users] Why are there five Urey-Bradley parameters Lee-Ping
[gmx-users] Disregard my question about Urey-Bradley Lee-Ping
[gmx-users] protein in hole mahbubeh zarrabi
[gmx-users] protein in hole gportel at gwdg.de
[gmx-users] protein in hole Mark Abraham
=?koi8-r?Q?Re=3A_Re=3A_[gmx-users]_Energy_difference_-_Gromacs, _Autodock?= Александр Журавлев
[gmx-users]_Energy_difference_-_Gromacs, _Autodock?= Mark Abraham
[gmx-users] Format of a Topology File When Using Amber FF in Gromacs 한상화
[gmx-users]_Energy_difference_-_Gromacs, _Autodock?= David van der Spoel
[gmx-users] Format of a Topology File When Using Amber FF in Gromacs David van der Spoel
[gmx-users] DNA simulations with GROMACS??? Anna Reymer
[gmx-users] Format of a Topology File When Using Amber FF in Gromacs Mark Abraham
[gmx-users] DNA simulations with GROMACS??? Mark Abraham
[gmx-users] Format of a Topology File When Using Amber FF inGromacs 한상화
[gmx-users] Format of a Topology File When Using Amber FF inGromacs David van der Spoel
[gmx-users] DNA simulations with GROMACS??? Erik Marklund
[gmx-users] Question about DNA simulation David van der Spoel
[gmx-users] DNA simulations with GROMACS??? Anna Reymer
[gmx-users] Question about DNA simulation George Abadir
[gmx-users] pdb2gmx and arginine Roberto Marchese
[gmx-users] pdb2gmx and arginine Yang Ye
[gmx-users] pdb2gmx and arginine David van der Spoel
[gmx-users] NMA for a group Christian Seifert
[gmx-users] Question about DNA simulation Maik Goette
[gmx-users] make-hole mahbubeh zarrabi
[gmx-users] Umbrella sampling of a ligand inside a pore Hadas Leonov
[gmx-users] Problem with g_rdf /option com OZGE ENGIN
[gmx-users] Anisotropic Pressure Matteo Guglielmi
[gmx-users] Anisotropic Pressure Pedro Alexandre de Araújo Gomes Lapido Loureiro
[gmx-users] normal mode analysis (size issue) Liwei Li
[gmx-users] normal mode analysis (size issue) Erik Lindahl
[gmx-users] rtp entry ASHWINI JAYAPRAKASH
[gmx-users] rtp entry Mark Abraham
[gmx-users] Umbrella sampling of a ligand inside a pore chris.neale at utoronto.ca
[gmx-users] Question about DNA simulation George Abadir
[gmx-users] conformational distance D4 ravishk kumar
[gmx-users] conformational distance D4 David van der Spoel
[gmx-users] 2nd Virial coefficient and Hydrophobic moment Calculation Naser, Md Abu
[gmx-users] Basic Query priyanka srivastava
[gmx-users] Inclusion of an angle-angle cross term? Lee-Ping
[gmx-users] website problems Jeroen van Bemmelen
[gmx-users] potential energy =nan Sheyore Omovie
[gmx-users] Basic Query Martin Höfling
[gmx-users] potential energy =nan Martin Höfling
[gmx-users] potential energy =nan David van der Spoel
[gmx-users] website problems David van der Spoel
[gmx-users] potential energy =nan Mark Abraham
[gmx-users] temperature.. abhishek sharma
[gmx-users] temperature.. David van der Spoel
[gmx-users] Basic Query priyanka srivastava
[gmx-users] temperature.. Mark Abraham
[gmx-users] g_bundle! priyanka srivastava
[gmx-users] Basic Query Mark Abraham
[gmx-users] grompp or parameter file problem? Anna Reymer
[gmx-users] g_bundle! Patrick Fuchs
[gmx-users] grompp or parameter file problem? Mark Abraham
[gmx-users] g_bundle! Marc F. Lensink
[gmx-users] Umbrella sampling of a ligand inside a pore Hadas Leonov
[gmx-users] Inclusion of an angle-angle cross term? Mark Abraham
[gmx-users] grompp or parameter file problem? Yang Ye
[gmx-users] potential energy =nan Sheyore Omovie
[gmx-users] potential energy =nan Sheyore Omovie
[gmx-users] potential energy =nan David van der Spoel
[gmx-users] Basic Query David van der Spoel
[gmx-users] Inclusion of an angle-angle cross term? David van der Spoel
[gmx-users] Inclusion of an angle-angle cross term? David van der Spoel
[gmx-users] website problems David van der Spoel
[gmx-users] Basic Query Martin Höfling
[gmx-users] Umbrella sampling of a ligand inside a pore Chris Neale
[gmx-users] Basic Query priyanka srivastava
[gmx-users] Basic Query David van der Spoel
[gmx-users] new to gromacs vijay kumar
[gmx-users] new to gromacs David van der Spoel
[gmx-users] new to gromacs Mark Abraham
[gmx-users] rtp entry ASHWINI JAYAPRAKASH
[gmx-users] rtp entry Mark Abraham
[gmx-users] RE:Shear viscosity/bulk viscosity Junfang.Zhang at csiro.au
[gmx-users] RE:Shear viscosity/bulk viscosity Mark Abraham
[gmx-users] RE:Shear viscosity/bulk viscosity Junfang.Zhang at csiro.au
[gmx-users] gromos43A1 force constants herbst at fhi-berlin.mpg.de
[gmx-users] gromos43A1 force constants Mark Abraham
[gmx-users] grompp or parameter file problem? Anna Reymer
[gmx-users] grompp or parameter file problem? Anna Reymer
[gmx-users] g_bundle! Alan Dodd
[gmx-users] obtaining information from trj file Dave Segala
[gmx-users] obtaining information from trj file Mark Abraham
[gmx-users] obtaining information from trj file Alan Dodd
[gmx-users] continuation problem Anthony Cruz Balberdi
[gmx-users] trjconv -pbc? bmmothan at ucalgary.ca
[gmx-users] obtaining information from trj file Erik Lindahl
[gmx-users] trjconv -pbc? Tsjerk Wassenaar
[gmx-users] g_bundle! priyanka srivastava
[gmx-users] trjconv -pbc? bmmothan at ucalgary.ca
[gmx-users] trjconv -pbc Mauricio Pablo Sica
[gmx-users] trjconv -pbc? Tsjerk Wassenaar
[gmx-users] trjconv -pbc Tsjerk Wassenaar
[gmx-users] g_bundle! TJ Piggot
[gmx-users] trjconv -pbc? bmmothan at ucalgary.ca
[gmx-users] Force Calculation - SBLOCKS Justin M. Shorb
[gmx-users] grompp or parameter file problem? Yang Ye
[gmx-users] grompp or parameter file problem? Yang Ye
[gmx-users] rtp entry ASHWINI JAYAPRAKASH
[gmx-users] rtp entry Mark Abraham
[gmx-users] Force Calculation - SBLOCKS Mark Abraham
[gmx-users] RE:Correction to reference Junfang.Zhang at csiro.au
[gmx-users] g_bundle! priyanka srivastava
[gmx-users] grompp or parameter file problem? Monika Sharma
[gmx-users] Force Calculation - SBLOCKS David van der Spoel
[gmx-users] RE:Correction to reference David van der Spoel
[gmx-users] gromos43A1 force constants David van der Spoel
[gmx-users] grompp or parameter file problem? Monika Sharma
[gmx-users] 2nd Virial coefficient and Hydrophobic moment Calculation David van der Spoel
[gmx-users] NMA for a group Christian Seifert
[gmx-users] NMA for a group David van der Spoel
[gmx-users] NMA for a group Bert de Groot
[gmx-users] NMA for a group Mark Abraham
[gmx-users] NMA for a group Lars Schaefer
[gmx-users] radius of gyration taking bound water into account Fabrizio Mancinelli
[gmx-users] NMA for a group Christian Seifert
[gmx-users] Reg. minimization C.RAMYA
[gmx-users] NMA for a group Christian Seifert
[gmx-users] NMA for a group David van der Spoel
[gmx-users] Reg. minimization David van der Spoel
[gmx-users] NMA for a group Mark Abraham
[gmx-users] Regarding POPE lipid parameters naga raju
[gmx-users] NMA for a group Bert de Groot
[gmx-users] NMA for a group Nguyen Hoang Phuong
[gmx-users] Regarding POPE lipid parameters Oliver Mirus
[gmx-users] radius of gyration taking bound water into account David van der Spoel
[gmx-users] Regarding POPE lipid parameters Chris Neale
[gmx-users] 2nd Virial coefficient and Hydrophobicmoment Calculation Naser, Md Abu
[gmx-users] Installation/compilation problem ---v3.3.1 philippe ayala
[gmx-users] intermolecular energy Jones de Andrade
[gmx-users] intermolecular energy Mark Abraham
[gmx-users] Installation/compilation problem ---v3.3.1 Mark Abraham
[gmx-users] Installation/compilation problem ---v3.3.1 Patrick Fuchs
[gmx-users] Re: Regarding POPE lipid parameters naga raju
[gmx-users] intermolecular energy Jones de Andrade
[gmx-users] intermolecular energy David van der Spoel
[gmx-users] intermolecular energy Jones de Andrade
[gmx-users] intermolecular energy David van der Spoel
[gmx-users] intermolecular energy Jones de Andrade
[gmx-users] intermolecular energy Jones de Andrade
[gmx-users] Regarding minimization of POPE:POPG lipid bilayer naga raju
[gmx-users] intermolecular energy David van der Spoel
[gmx-users] intermolecular energy David van der Spoel
[gmx-users] linux mahbubeh zarrabi
[gmx-users] linux Martin Höfling
[gmx-users] Energy minimization problem with Double precision and mpi Josiah Zayner
[gmx-users] Energy minimization problem with Double precision and mpi Josiah Zayner
[gmx-users] Installation/compilation problem ---v3.3.1 philippe ayala
[gmx-users] intermolecular energy Jones de Andrade
[gmx-users] intermolecular energy David van der Spoel
[gmx-users] Installation/compilation problem ---v3.3.1 David van der Spoel
[gmx-users] Energy minimization problem with Double precision and mpi David van der Spoel
[gmx-users] Energy minimization problem with Double precision and mpi Josiah Zayner
[gmx-users] intermolecular energy Jones de Andrade
[gmx-users] editconf -translate help Shayla Fitzsimmons
[gmx-users] intermolecular energy Jones de Andrade
[gmx-users] editconf -translate help David van der Spoel
[gmx-users] Energy minimization problem with Double precision and mpi David van der Spoel
[gmx-users] superimpose pdbs Alan
[gmx-users] superimpose pdbs David van der Spoel
RES: [gmx-users] superimpose pdbs Caio Julio Martins Veloso
[gmx-users] Regarding minimization of POPE:POPG lipid bilayer chris.neale at utoronto.ca
[gmx-users] Energy minimization problem with Double precision and mpi Josiah Zayner
[gmx-users] Energy minimization problem with Double precision and mpi David van der Spoel
[gmx-users] superimpose pdbs Yang Ye
[gmx-users] Re: WCA and free energy calculations David Mobley
[gmx-users] Re: WCA and free energy calculations Berk Hess
[gmx-users] Re: WCA and free energy calculations David Mobley
[gmx-users] make-hole,grasp mahbubeh zarrabi
[gmx-users] Re: WCA and free energy calculations Berk Hess
[gmx-users] Re: WCA and free energy calculations Mark Abraham
[gmx-users] Re: WCA and free energy calculations Berk Hess
[gmx-users] NMA for a group Christian Seifert
[gmx-users] make-hole,grasp Chris Neale
[gmx-users] Re: WCA and free energy calculations jtomlins at purdue.edu
[gmx-users] Re: WCA and free energy calculations David Mobley
[gmx-users] A few general questions on Gromacs Corina Stratan
[gmx-users] A few general questions on Gromacs David van der Spoel
[gmx-users] NMA for a group David van der Spoel
[gmx-users] NMA for a group Lars Schaefer
[gmx-users] monitoring the dynamics of proline jayant_jacques
[gmx-users] monitoring the dynamics of proline Dallas B. Warren
[gmx-users] monitoring the dynamics of proline Mark Abraham
[gmx-users] Re: WCA and free energy calculations Berk Hess
[gmx-users] A few general questions on Gromacs Martin Höfling
[gmx-users] mk_angndx Fabio Affinito
[gmx-users] Gromacs website broken pim schravendijk
[gmx-users] Gromacs website broken Carsten Kutzner
[gmx-users] Gromacs website broken David van der Spoel
[gmx-users] mk_angndx David van der Spoel
[gmx-users] A few general questions on Gromacs Corina Stratan
[gmx-users] A few general questions on Gromacs Stéphane Téletchéa
[gmx-users] A few general questions on Gromacs Mark Abraham
[gmx-users] Re: mk_angndx Fabio Affinito
[gmx-users] DNA simulations with GROMACS??? Anna Reymer
[gmx-users] producing top and gro files for the molecule with metal ions. Anna Reymer
[gmx-users] producing top and gro files for the molecule with metal ions. Mark Abraham
[gmx-users] producing top and gro files for the molecule with metal ions. Tsjerk Wassenaar
[gmx-users] rotational fit in XY plane only Naser, Md Abu
[gmx-users] Re: mk_angndx David van der Spoel
[gmx-users] rotational fit in XY plane only David van der Spoel
[gmx-users] producing top and gro files for the molecule with metal ions. David van der Spoel
[gmx-users] rtp entry ASHWINI JAYAPRAKASH
[gmx-users] rtp entry David van der Spoel
[gmx-users] rtp entry Mark Abraham
[gmx-users] A few general questions on Gromacs Martin Höfling
[gmx-users] pdb2gmx serdar durdagi
[gmx-users] pdb2gmx Tsjerk Wassenaar
[gmx-users] pdb2gmx Mark Abraham
[gmx-users] x2top stalls when generating topology file Robert Johnson
[gmx-users] x2top stalls when generating topology file David van der Spoel
[gmx-users] A few general questions on Gromacs David van der Spoel
[gmx-users] MONITORING SALT BRIDGES jayant_jacques
[gmx-users] MONITORING SALT BRIDGES David van der Spoel
[gmx-users] A few general questions on Gromacs Martin Höfling
[gmx-users] Non bonded parameters for Xe Xe Interactions Arneh Babakhani
[gmx-users] pdb2gmx problem: one solution serdar durdagi
[gmx-users] Non bonded parameters for Xe Xe Interactions David van der Spoel
[gmx-users] pdb2gmx problem: one solution Mark Abraham
[gmx-users] rotational fit in XY plane only Carsten Kutzner
[gmx-users] A few general questions on Gromacs Stéphane Téletchéa
[gmx-users] PROBLEM REGARDING pdb2gmx & restraints gurpreet singh
[gmx-users] PROBLEM REGARDING pdb2gmx & restraints Tsjerk Wassenaar
[gmx-users] PROBLEM REGARDING pdb2gmx & restraints Mark Abraham
[gmx-users] BUG!!!!: FENE bond stretching potential Jiang ran
[gmx-users] BUG!!!!: FENE bond stretching potential Berk Hess
[gmx-users] v3.2.1 to v3.3 problems Dave Segala
[gmx-users] representative structure using g-cluster bmmothan at ucalgary.ca
[gmx-users] v3.2.1 to v3.3 problems David van der Spoel
[gmx-users] representative structure using g-cluster David van der Spoel
[gmx-users] Non bonded parameters for Xe Xe Interactions Arneh Babakhani
[gmx-users] Energy Minimization Protocol for running Normal Mode Analysis Anirban Ghosh
[gmx-users] error during the minimization gurpreet singh
[gmx-users] Energy Minimization Protocol for running Normal Mode Analysis Mark Abraham
[gmx-users] error during the minimization Mark Abraham
[gmx-users] error during the minimization gurpreet singh
[gmx-users] Non bonded parameters for Xe Xe Interactions David van der Spoel
[gmx-users] Re: error during the minimization M.N. Manoj
[gmx-users] Re: OPLSaa+Lipid.itp question Oliver Mirus
[gmx-users] Re: error during the minimization gurpreet singh
[gmx-users] g_saltbr -h: "difference" should read "distance"? Ryszard Czerminski
[gmx-users] OPLSaa+Lipid.itp question chris.neale at utoronto.ca
[gmx-users] g_saltbr -h: "difference" should read "distance"? David van der Spoel
[gmx-users] Energy Minimization Protocol for running Normal ModeAnalysis Josiah Zayner
[gmx-users] OpenMosix and Gromacs Nicolas Sapay
[gmx-users] OpenMosix and Gromacs Sabuj Pattanayek
[gmx-users] OpenMosix and Gromacs Nicolas Sapay
[gmx-users] Re: error during the minimization M.N. Manoj
[gmx-users] center of mass mahbubeh zarrabi
[gmx-users] How to proceed with energy minimization for Normal Mode Analysis Anirban Ghosh
[gmx-users] OpenMosix and Gromacs David van der Spoel
[gmx-users] How to proceed with energy minimization for Normal Mode Analysis David van der Spoel
[gmx-users] center of mass David van der Spoel
[gmx-users] OpenMosix and Gromacs Yang Ye
[gmx-users] pb with temperature in brownian dynamics BON Michael

Last message date: Sat Jun 30 20:55:03 CEST 2007
Archived on: Thu Nov 14 12:03:43 CET 2013

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