[gmx-users] sigmentation fault while creating index file

David van der Spoel spoel at xray.bmc.uu.se
Tue Jun 12 09:41:03 CEST 2007

naga raju wrote:
> Dear gmx users,
>                 I am trying to make index file for
> POPG lipid molecule using the command:
>   make_ndx -f popg.pdb -o index.ndx
> I am getting segmentation fault, but when i am
> removing 53 atom in pdb file, i couldn't get
> segmentation fault.
The file you attached is not the same as the one in the command above. 
If this problem is reproducible, please make sure first that your pdb 
file is correct (according to the standard). If that is the case you can 
submit a bugzilla.
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se

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