[gmx-users] normal mode analysis (size issue)

Liwei Li liwei.li at gmail.com
Tue Jun 19 17:26:06 CEST 2007


I want to carry out normal mode analysis on a large protein (about 10,000
atoms) without using coarse grain approximations. Amber is out of the
question since it can only handle about 5,000 atoms for NMA. I am wondering
if GROMACS can deal with this assuming running on a 64-bit machine with 8G
memory. I truely appreciate it if you can help.

Liwei Li
Postdoctoral Associate
Department of Biochemistry,
Indiana University School of Medicine,
410 W. 10th Street, Suite 5000
Indianaposlis, IN 46202
Tel: (317)278-9185
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