[gmx-users] obtaining information from trj file

[Mark Abraham]

Dave Segala wrote:
> Dear All,
> 
> I have complete my MD run and have produced a .trj file which you know
> contains all atom x, v and f for each time step. I know that I can view
> this file using gmxdump. Is there a way to actaully get these values using
> matlab, C, C++, or even excel to use them?

No these are proprietary and protected by DRM. Only GROMACS tools can 
get the values :-P

Redirecting the output gmxdump to a text file and slurping that up is 
the easiest way, although probably the least elegant.

Mark