[gmx-users] problem with trjconv

Mark Abraham Mark.Abraham at anu.edu.au
Thu Mar 1 02:21:30 CET 2007

> Hi,
> First of all, thank you for your attention. I used g_hbond in order to analyze  hydrogen bonds formed;but, I need a more detailed information. The command that you mentioned is capable of giving information about hydrogen bonds formed in each frame. However, I want to investigate the exact donor and acceptor groups in each frame. In this respect, I converted the xtc file to a pdb file  to get all of the coordinates of both water and protein molecules.
> What should I do?

Gee I sound like a broken record. Have you looked at "man g_hbond" to 
see all of its options?


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