[gmx-users] g_density : centering the density distribution plot

Arneh Babakhani ababakha at mccammon.ucsd.edu
Tue Mar 6 04:53:43 CET 2007


I'd like to use g_density to obtain a density distribution plot.  Now, 
I'd like to place the center of that distribution on the zero of the 
horizontal axis.   How do I so using g_density?  From reading the 
manual, I see there's an option, "-center", which should do the trick.  
But I've tried it, and it doesn't work (the result is no different than 
when I don't use this option).   I'm also using "-d Z" (the option to 
make the Z-axis the normal direction).  Any suggestions? 


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