[gmx-users] rotational fit in XY plane only

Berk Hess gmx3 at hotmail.com
Wed May 2 15:13:06 CEST 2007




>From: "Berk Hess" <gmx3 at hotmail.com>
>Reply-To: Discussion list for GROMACS users <gmx-users at gromacs.org>
>To: gmx-users at gromacs.org
>Subject: RE: [gmx-users] rotational fit in XY plane only
>Date: Wed, 02 May 2007 14:10:59 +0200
>
>
>
>
>>From: Dr Itamar Kass <ikass at uq.edu.au>
>>Reply-To: Discussion list for GROMACS users <gmx-users at gromacs.org>
>>To: Discussion list for GROMACS users <gmx-users at gromacs.org>
>>Subject: [gmx-users] rotational fit in XY plane only
>>Date: Wed, 02 May 2007 19:44:12 +0800
>>
>>Hi all,
>>
>>I study a protein which is moving toward an interface during my
>>simulation. In order to analyse the why the protein is bound to the
>>interface I want to fit all my results. There is no problem with
>>translational fit, but I want to do rotational fit only in the XY plane.
>>Is there a nice way of doing so?
>>
>>Best,
>>Itamar
>
>Currently there is not.
>I would like to have that feature as well.

I implemented an xy only fitting option for trjconv in the development 
branch.

Berk.

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