[gmx-users] Question on [ angles ] in topology file?
David van der Spoel
spoel at xray.bmc.uu.se
Fri May 4 19:37:52 CEST 2007
Chze Ling Wee wrote:
> Hi GMX users -
>
> In the [ angles ] section of the topology file for a protein, is there a
> minimum or maximum angle value that can be specified i.e.
>
> [ angles ]
> ; i j k funct angle force.c.
> 1 2 3 1 x 250
>
> Is there a range of values x can take? Can x be negative?
>
> Are x = -90 and x = 270 equivalent?
>
0<angle<180
since we use an arccos it has to be in this range.
--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://folding.bmc.uu.se
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
More information about the gromacs.org_gmx-users
mailing list