[gmx-users] Gromacs on Xserver G5 /MPI
David van der Spoel
spoel at xray.bmc.uu.se
Wed May 16 16:13:14 CEST 2007
abelius wrote:
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA1
>
> Mpi version: mpich-1.2.6
>
> I tested the same command on a linux-gentoo system with mpich-1.2.7 and
> it worked perfectly.
>
> I guess I should update the mpich first? This would be a lot of work
> since It would mean updating SGE also. Any ideas for easier tests?
>
> Thnx,
> Abel
>
MPI 1.x used to be bad together with gromacs. I don't know about this
latest version, but mpich 2.x would be better.
--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://folding.bmc.uu.se
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
More information about the gromacs.org_gmx-users
mailing list