[gmx-users] glibc error with g_density (only for some cases)
arun.target at gmail.com
Fri May 18 23:35:23 CEST 2007
My gcc compiler version is 4.0.1. Is there any
problem with this version??
On 5/18/07, David van der Spoel <spoel at xray.bmc.uu.se> wrote:
> Arun kumar wrote:
> > Hai Mark..
> > Thanks for your suggestions. I will think about my
> > problem clearly and will post a message with much care so that every
> > one can easily read. Also I can get a response.
> > About g_density I will check once again the log file
> > and post the reply here. But I think there is nothing went wrong in my
> > simulations in between 500 and 1500 time steps. I am able to evaluate
> > all properties for those frames also. Anyway I will check once again.
> > Thanks and regards
> > Arun Kumar
> > On 5/18/07, Mark Abraham <Mark.Abraham at anu.edu.au> wrote:
> >> Arun kumar wrote:
> >> > Dear gmx-users,
> >> > I want to discuss and understand about an
> >> > error I am getting only at times.... I am simulating a DPPC double
> >> > bilayer phase(got the coordinates from Dr Tieleman's website). I used
> >> > genbox -cs to get double bilayer. Then i started simulations
> >> > normally.
> >> >
> >> > When I use g_density -b 500 I get the following error
> >> >
> >> > *** glibc detected *** free(): invalid next size (normal):
> >> > 0x0000000000713260 *** Aborted
> >> >
> This is either a compilation problem or a bug, but most likely the
> first. Did you use gcc 4.1.x by any chance? That compiler is broken.
> David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
> Dept. of Cell and Molecular Biology, Uppsala University.
> Husargatan 3, Box 596, 75124 Uppsala, Sweden
> phone: 46 18 471 4205 fax: 46 18 511 755
> spoel at xray.bmc.uu.se spoel at gromacs.org http://folding.bmc.uu.se
> gmx-users mailing list gmx-users at gromacs.org
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
More information about the gromacs.org_gmx-users