[gmx-users] Two polypeptides in one box

Yang Ye leafyoung at yahoo.com
Sat May 19 19:34:56 CEST 2007

To combine two structures, use editconf to translate/rotate each first and combine with a text editor.

----- Original Message ----
From: Sheyore Omovie <omovie_johnnie at hotmail.com>
To: gmx-users at gromacs.org
Sent: Sunday, May 20, 2007 1:22:15 AM
Subject: [gmx-users] Two polypeptides in one box

Hi gromacs users,
I want to simulate interaction between two polypeptides in one box. I have 
read Tsjerk response to a similar question. However, i dont know just how to 
implement it, i.e how do I position two pdb files using editconf and create 
one pdb file. If possible I'll appreciate specific commands on how to 
implement this.
I also tried using pymol, but because I'm also new to this software, I could 
not figure it out.

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