[gmx-users] Two polypeptides in one box
leafyoung at yahoo.com
Sat May 19 19:34:56 CEST 2007
To combine two structures, use editconf to translate/rotate each first and combine with a text editor.
----- Original Message ----
From: Sheyore Omovie <omovie_johnnie at hotmail.com>
To: gmx-users at gromacs.org
Sent: Sunday, May 20, 2007 1:22:15 AM
Subject: [gmx-users] Two polypeptides in one box
Hi gromacs users,
I want to simulate interaction between two polypeptides in one box. I have
read Tsjerk response to a similar question. However, i dont know just how to
implement it, i.e how do I position two pdb files using editconf and create
one pdb file. If possible I'll appreciate specific commands on how to
I also tried using pymol, but because I'm also new to this software, I could
not figure it out.
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